PlantSME Plant secondary metabolism enzyme database

Leucobryum bowringii (leucobryum_bowringii)

Imported from atlas release summary for Leucobryum bowringii.

694
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.51% Terpenoid pathway 22.33% Alkaloid pathway 20.32% Flavonoid pathway 12.68% Rosmarinic acid pathway 11.53% Steroid pathway 6.63%
Family Distribution
C4H 7.52% C3'H/CYP98A 6.86% CYP76 5.81% BAHD 4.71% 4CL 4.56% POD 4.21% IFS 4.11% NMT 3.46%
Other Families 58.77%
More Families (95)
BR6OX2/CYP85A2 59 2.96% DWF4/CYP90B1 52 2.61% T3O 51 2.56% STR 45 2.25% PAL 45 2.25% IO 44 2.2% F3H 43 2.15% IFR 40 2.0% F3'H/CYP75B 39 1.95% CODM/T6ODM 34 1.7% PYKS 31 1.55% GS 30 1.5% UGT 30 1.5% UFGT 29 1.45% 7DLGT 27 1.35% SMT1/SMT2/SMT3 24 1.2% LAC 23 1.15% COMT 22 1.1% G8O/G8H 21 1.05% T16H 21 1.05% CHS 20 1.0% F3'5'H/CYP75A 20 1.0% CAD 19 0.95% CAS 18 0.9% TRI/TRII 17 0.85% CSE 16 0.8% CYP71 15 0.75% SGD 14 0.7% SLS 13 0.65% 16OMT 13 0.65% FNS 13 0.65% CNMT 12 0.6% LAMT 12 0.6% H6H 12 0.6% HCT 11 0.55% RAS 11 0.55% CPD/CYP90A1 9 0.45% 8HGO 8 0.4% COR 8 0.4% NCS 8 0.4% CYP51G1 8 0.4% SQS/FDFT1 8 0.4% AACT 8 0.4% 7DLH 7 0.35% CYP80B1 7 0.35% ANR 7 0.35% DET2 7 0.35% F5H/CYP84A 6 0.3% BR6OX1/CYP85A1 6 0.3% CYP90D1 6 0.3% BBE 5 0.25% PMT 5 0.25% TDC 5 0.25% CCR 5 0.25% TAT 5 0.25% ROT3/CYP90C1 5 0.25% DWF5 5 0.25% FPPS 5 0.25% MVK 5 0.25% CYP719 4 0.2% MPO 4 0.2% DFR 4 0.2% CHI 4 0.2% ANS/LDOX 4 0.2% CPR 4 0.2% TPS 4 0.2% GGPPS 4 0.2% GES 3 0.15% ISY 3 0.15% 6OMT_4OMT_SOMT 3 0.15% ADC 3 0.15% HPPR 3 0.15% SQE 3 0.15% CCoAOMT 2 0.1% SMO1/SMO2 2 0.1% MCT/IspD 2 0.1% MVD 2 0.1% HMGS 2 0.1% HDS/IspG 2 0.1% DXS 2 0.1% TYDC_DDC 1 0.05% FLS 1 0.05% HYD1 1 0.05% DWF1 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF7 1 0.05% MDS/IspF 1 0.05% PMK 1 0.05% DXR 1 0.05% CMK/IspE 1 0.05% GPPS 1 0.05% IDI 1 0.05% HDR/IspH 1 0.05% HMGR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 184 10 POD (78) View species results
Terpenoid pathway 155 19 BAHD (59) View species results
Alkaloid pathway 141 17 NMT (27) View species results
Flavonoid pathway 88 10 UFGT (25) View species results
Rosmarinic acid pathway 80 7 C4H (38) View species results
Steroid pathway 46 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 878 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 116 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Lbowcontig_100019400 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Lbowcontig_10002000 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Lbowcontig_10003600 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
Lbowcontig_100039090 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Lbowcontig_10014900 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Lbowcontig_110047600 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Lbowcontig_120048740 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Lbowcontig_120051280 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Lbowcontig_120055560 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Lbowcontig_120056160 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Lbowcontig_120060510 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Lbowcontig_120068220 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Lbowcontig_120074230 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
Lbowcontig_120077150 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
Lbowcontig_120077230 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Lbowcontig_120078600 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Lbowcontig_120079940 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Lbowcontig_120080340 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Lbowcontig_120080370 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Lbowcontig_140100710 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Lbowcontig_150106560 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Lbowcontig_150107810 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Lbowcontig_150108400 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Lbowcontig_150109000 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Lbowcontig_150111720 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Lbowcontig_160130350 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_160140000 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Lbowcontig_160146350 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Lbowcontig_170150350 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_190161080 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Lbowcontig_190161210 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Lbowcontig_190162040 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_200176800 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_200176840 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_200184760 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Lbowcontig_200189540 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Lbowcontig_200204480 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Lbowcontig_200206800 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Lbowcontig_200206970 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_200210580 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Lbowcontig_20172220 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Lbowcontig_30223600 Alkaloid NMT medium borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Lbowcontig_30226430 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Lbowcontig_40237200 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Lbowcontig_40248760 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Lbowcontig_40251840 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Lbowcontig_40252200 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Lbowcontig_50268720 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Lbowcontig_50269590 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Lbowcontig_50278790 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH