Leucobryum bowringii (leucobryum_bowringii)
Imported from atlas release summary for Leucobryum bowringii.
694
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
694
Candidate Genes
C4H
7.52%
C3'H/CYP98A
6.86%
CYP76
5.81%
BAHD
4.71%
4CL
4.56%
POD
4.21%
IFS
4.11%
NMT
3.46%
Other Families
58.77%
More Families (95)
BR6OX2/CYP85A2
59
2.96%
DWF4/CYP90B1
52
2.61%
T3O
51
2.56%
STR
45
2.25%
PAL
45
2.25%
IO
44
2.2%
F3H
43
2.15%
IFR
40
2.0%
F3'H/CYP75B
39
1.95%
CODM/T6ODM
34
1.7%
PYKS
31
1.55%
GS
30
1.5%
UGT
30
1.5%
UFGT
29
1.45%
7DLGT
27
1.35%
SMT1/SMT2/SMT3
24
1.2%
LAC
23
1.15%
COMT
22
1.1%
G8O/G8H
21
1.05%
T16H
21
1.05%
CHS
20
1.0%
F3'5'H/CYP75A
20
1.0%
CAD
19
0.95%
CAS
18
0.9%
TRI/TRII
17
0.85%
CSE
16
0.8%
CYP71
15
0.75%
SGD
14
0.7%
SLS
13
0.65%
16OMT
13
0.65%
FNS
13
0.65%
CNMT
12
0.6%
LAMT
12
0.6%
H6H
12
0.6%
HCT
11
0.55%
RAS
11
0.55%
CPD/CYP90A1
9
0.45%
8HGO
8
0.4%
COR
8
0.4%
NCS
8
0.4%
CYP51G1
8
0.4%
SQS/FDFT1
8
0.4%
AACT
8
0.4%
7DLH
7
0.35%
CYP80B1
7
0.35%
ANR
7
0.35%
DET2
7
0.35%
F5H/CYP84A
6
0.3%
BR6OX1/CYP85A1
6
0.3%
CYP90D1
6
0.3%
BBE
5
0.25%
PMT
5
0.25%
TDC
5
0.25%
CCR
5
0.25%
TAT
5
0.25%
ROT3/CYP90C1
5
0.25%
DWF5
5
0.25%
FPPS
5
0.25%
MVK
5
0.25%
CYP719
4
0.2%
MPO
4
0.2%
DFR
4
0.2%
CHI
4
0.2%
ANS/LDOX
4
0.2%
CPR
4
0.2%
TPS
4
0.2%
GGPPS
4
0.2%
GES
3
0.15%
ISY
3
0.15%
6OMT_4OMT_SOMT
3
0.15%
ADC
3
0.15%
HPPR
3
0.15%
SQE
3
0.15%
CCoAOMT
2
0.1%
SMO1/SMO2
2
0.1%
MCT/IspD
2
0.1%
MVD
2
0.1%
HMGS
2
0.1%
HDS/IspG
2
0.1%
DXS
2
0.1%
TYDC_DDC
1
0.05%
FLS
1
0.05%
HYD1
1
0.05%
DWF1
1
0.05%
FK
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
MDS/IspF
1
0.05%
PMK
1
0.05%
DXR
1
0.05%
CMK/IspE
1
0.05%
GPPS
1
0.05%
IDI
1
0.05%
HDR/IspH
1
0.05%
HMGR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 184 | 10 | POD (78) | View species results |
| Terpenoid pathway | 155 | 19 | BAHD (59) | View species results |
| Alkaloid pathway | 141 | 17 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 10 | UFGT (25) | View species results |
| Rosmarinic acid pathway | 80 | 7 | C4H (38) | View species results |
| Steroid pathway | 46 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 878 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 116 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Lbowcontig_50282700 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Lbowcontig_60299030 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Lbowcontig_60302650 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Lbowcontig_60305070 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Lbowcontig_60310640 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Lbowcontig_60318480 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Lbowcontig_60318500 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Lbowcontig_80328100 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Lbowcontig_80328380 | Alkaloid | NMT | low | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Lbowcontig_80332600 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Lbowcontig_80341230 | Alkaloid | NMT | medium | pass | NMT__00051__sp_Q96565_AMNMT_HORVV |
| Lbowcontig_80343280 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Lbowcontig_80344990 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Lbowcontig_90351570 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Lbowcontig_90355200 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Lbowcontig_90356650 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Lbowcontig_90357990 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Lbowcontig_90362360 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Lbowcontig_90364560 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |