Lotus japonicus (lotus_japonicus)
Imported from atlas release summary for Lotus japonicus.
1869
Candidate Protein Records
1586
Pathway-Level Records
4066
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4066
Family-Level Calls
C4H
6.1%
C3'H/CYP98A
6.05%
BAHD
5.12%
UFGT
4.28%
UGT
4.28%
7DLGT
4.18%
T3O
3.79%
CYP76
3.76%
Other Families
62.44%
More Families (96)
IFS
149
3.66%
F3H
138
3.39%
POD
133
3.27%
4CL
129
3.17%
F3'H/CYP75B
87
2.14%
DWF4/CYP90B1
87
2.14%
NMT
86
2.12%
CODM/T6ODM
83
2.04%
BR6OX2/CYP85A2
71
1.75%
STR
66
1.62%
H6H
61
1.5%
CYP71
58
1.43%
CAD
57
1.4%
SMT1/SMT2/SMT3
52
1.28%
CAS
47
1.16%
COMT
46
1.13%
HCT
46
1.13%
CSE
44
1.08%
RAS
43
1.06%
SGD
41
1.01%
CYP90D1
40
0.98%
PYKS
39
0.96%
LAC
39
0.96%
G8O/G8H
35
0.86%
IFR
34
0.84%
PAL
33
0.81%
16OMT
32
0.79%
TRI/TRII
32
0.79%
ANR
32
0.79%
T16H
29
0.71%
F3'5'H/CYP75A
29
0.71%
COR
28
0.69%
GES
27
0.66%
F5H/CYP84A
27
0.66%
TPS
27
0.66%
GS
25
0.61%
CPD/CYP90A1
25
0.61%
PMT
24
0.59%
BR6OX1/CYP85A1
24
0.59%
7DLH
23
0.57%
CCR
22
0.54%
BBE
20
0.49%
LAMT
20
0.49%
CHS
19
0.47%
IO
18
0.44%
NCS
17
0.42%
8HGO
16
0.39%
SLS
16
0.39%
TAT
15
0.37%
ROT3/CYP90C1
15
0.37%
CNMT
14
0.34%
ANS/LDOX
14
0.34%
FNS
12
0.3%
CPR
10
0.25%
CYP51G1
10
0.25%
TDC
9
0.22%
CCoAOMT
9
0.22%
SQE
9
0.22%
MPO
8
0.2%
CYP719
8
0.2%
DFR
8
0.2%
AACT
8
0.2%
CHI
7
0.17%
HPPR
7
0.17%
DET2
7
0.17%
MVK
7
0.17%
DXS
7
0.17%
DWF1
6
0.15%
GGPPS
6
0.15%
SQS/FDFT1
5
0.12%
FPPS
5
0.12%
ISY
4
0.1%
CYP80B1
4
0.1%
MVD
4
0.1%
6OMT_4OMT_SOMT
3
0.07%
TYDC_DDC
3
0.07%
SMO1/SMO2
3
0.07%
IDI
3
0.07%
HMGS
3
0.07%
HMGR
3
0.07%
MCT/IspD
3
0.07%
HDR/IspH
3
0.07%
ADC
2
0.05%
CYP80F1
2
0.05%
DWF5
2
0.05%
CMK/IspE
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
CPI1
1
0.02%
HYD1
1
0.02%
DWF7
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 442 | 19 | BAHD (174) | View species results |
| Alkaloid pathway | 347 | 19 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 322 | 12 | POD (128) | View species results |
| Flavonoid pathway | 247 | 8 | UFGT (165) | View species results |
| Rosmarinic acid pathway | 136 | 7 | C4H (54) | View species results |
| Steroid pathway | 92 | 13 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1558 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 297 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| LOTjap05G0024440.1 | Rosmarinic Acid | PAL | high | pass |
| LOTjap05G0026570.1 | Rosmarinic Acid | PAL | high | pass |
| LOTjap06G0002570.1 | Rosmarinic Acid | PAL | high | pass |
| LOTjapContig000810003250.1 | Rosmarinic Acid | PAL | high | pass |
| LOTjap01G0002320.1 | Rosmarinic Acid | RAS | medium | borderline |
| LOTjap01G0002340.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap01G0004720.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap01G0015720.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap01G0015730.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap01G0015740.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap01G0020810.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap01G0023820.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap01G0034910.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap01G0034920.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap01G0041480.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap01G0053910.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap01G0056360.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap02G0005730.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap02G0019040.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap02G0019070.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap02G0019970.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap02G0024390.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap03G0004000.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap03G0012590.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap03G0022280.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap03G0023420.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap03G0031810.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap03G0031830.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap03G0031840.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap03G0031850.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap03G0052690.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap04G0004910.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap04G0016380.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap04G0016390.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap04G0031090.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap04G0033530.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap04G0033570.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap04G0037510.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap05G0015310.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap05G0016540.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap06G0003790.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap06G0010080.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap06G0010140.1 | Rosmarinic Acid | RAS | low | borderline |
| LOTjap06G0015000.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap06G0015010.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap06G0015050.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap06G0016410.1 | Rosmarinic Acid | RAS | medium | pass |
| LOTjap02G0007100.1 | Rosmarinic Acid | TAT | low | borderline |
| LOTjap03G0012830.1 | Rosmarinic Acid | TAT | medium | pass |
| LOTjap03G0012840.1 | Rosmarinic Acid | TAT | medium | pass |