Neolamarckia cadamba (neolamarckia_cadamba)
Imported from atlas release summary for Neolamarckia cadamba.
2418
Candidate Protein Records
2110
Pathway-Level Records
4914
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4914
Family-Level Calls
C4H
5.94%
C3'H/CYP98A
5.76%
BAHD
5.19%
UGT
5.03%
7DLGT
4.4%
UFGT
4.29%
IFS
3.76%
4CL
3.66%
Other Families
61.97%
More Families (98)
POD
162
3.3%
T3O
157
3.19%
CYP76
151
3.07%
F3H
142
2.89%
STR
100
2.04%
BR6OX2/CYP85A2
97
1.97%
F3'H/CYP75B
95
1.93%
DWF4/CYP90B1
95
1.93%
NMT
87
1.77%
CAD
81
1.65%
CODM/T6ODM
80
1.63%
H6H
71
1.44%
SGD
71
1.44%
TRI/TRII
71
1.44%
CAS
64
1.3%
CSE
62
1.26%
SMT1/SMT2/SMT3
61
1.24%
7DLH
55
1.12%
LAC
53
1.08%
TPS
53
1.08%
GES
52
1.06%
CYP71
52
1.06%
GS
51
1.04%
IFR
45
0.92%
HCT
40
0.81%
T16H
39
0.79%
PAL
39
0.79%
NCS
37
0.75%
TAT
37
0.75%
G8O/G8H
36
0.73%
BBE
35
0.71%
SLS
34
0.69%
PYKS
33
0.67%
CYP90D1
33
0.67%
FNS
29
0.59%
CPD/CYP90A1
29
0.59%
IO
28
0.57%
RAS
28
0.57%
PMT
26
0.53%
8HGO
25
0.51%
ANR
24
0.49%
F3'5'H/CYP75A
22
0.45%
CCR
22
0.45%
COMT
22
0.45%
F5H/CYP84A
21
0.43%
BR6OX1/CYP85A1
20
0.41%
COR
18
0.37%
CYP51G1
18
0.37%
LAMT
17
0.35%
CPR
17
0.35%
AACT
15
0.31%
16OMT
14
0.28%
CNMT
14
0.28%
HPPR
14
0.28%
GGPPS
14
0.28%
TYDC_DDC
13
0.26%
DFR
13
0.26%
ROT3/CYP90C1
13
0.26%
FPPS
12
0.24%
MPO
11
0.22%
CHS
11
0.22%
ISY
10
0.2%
ANS/LDOX
10
0.2%
XMT_MXMT_DXMT
9
0.18%
CYP719
9
0.18%
SQE
9
0.18%
SQS/FDFT1
9
0.18%
DET2
8
0.16%
CHI
7
0.14%
DXS
7
0.14%
MVD
7
0.14%
CYP80B1
6
0.12%
FLS
6
0.12%
CCoAOMT
6
0.12%
MCT/IspD
6
0.12%
SMO1/SMO2
5
0.1%
MVK
5
0.1%
TDC
3
0.06%
CYP80F1
3
0.06%
DWF1
3
0.06%
FK
3
0.06%
HMGR
3
0.06%
PMK
3
0.06%
HMGS
3
0.06%
CMK/IspE
3
0.06%
IDI
3
0.06%
ADC
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
DWF5
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
HYD1
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 593 | 21 | UGT (235) | View species results |
| Alkaloid pathway | 535 | 23 | 7DLGT (99) | View species results |
| Phenylpropanoid pathway | 400 | 13 | POD (154) | View species results |
| Flavonoid pathway | 301 | 13 | UFGT (199) | View species results |
| Rosmarinic acid pathway | 163 | 7 | C4H (53) | View species results |
| Steroid pathway | 118 | 12 | CAS (55) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1773 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 323 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| neolamarckia_cadamba_evm.model.Contig81.984 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig830.1 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig84.197 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig84.352 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig84.8 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig858.10 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig87.10 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig87.25 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig87.4 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig892.3 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig9.2 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig906.369 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig906.6 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig906.7_evm.model.Contig906.8 | Rosmarinic Acid | C4H | medium | pass |
| neolamarckia_cadamba_evm.model.Contig96.234 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig96.237 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig96.361 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig96.8 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig967.190 | Rosmarinic Acid | C4H | low | borderline |
| neolamarckia_cadamba_evm.model.Contig975.2 | Rosmarinic Acid | C4H | low | borderline |