PlantSME Plant secondary metabolism enzyme database

Neolamarckia cadamba (neolamarckia_cadamba)

Imported from atlas release summary for Neolamarckia cadamba.

2110
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.1% Alkaloid pathway 25.36% Phenylpropanoid pathway 18.96% Flavonoid pathway 14.27% Rosmarinic acid pathway 7.73% Steroid pathway 5.59%
Family Distribution
C4H 5.94% C3'H/CYP98A 5.76% BAHD 5.19% UGT 5.03% 7DLGT 4.4% UFGT 4.29% IFS 3.76% 4CL 3.66%
Other Families 61.97%
More Families (98)
POD 162 3.3% T3O 157 3.19% CYP76 151 3.07% F3H 142 2.89% STR 100 2.04% BR6OX2/CYP85A2 97 1.97% F3'H/CYP75B 95 1.93% DWF4/CYP90B1 95 1.93% NMT 87 1.77% CAD 81 1.65% CODM/T6ODM 80 1.63% H6H 71 1.44% SGD 71 1.44% TRI/TRII 71 1.44% CAS 64 1.3% CSE 62 1.26% SMT1/SMT2/SMT3 61 1.24% 7DLH 55 1.12% LAC 53 1.08% TPS 53 1.08% GES 52 1.06% CYP71 52 1.06% GS 51 1.04% IFR 45 0.92% HCT 40 0.81% T16H 39 0.79% PAL 39 0.79% NCS 37 0.75% TAT 37 0.75% G8O/G8H 36 0.73% BBE 35 0.71% SLS 34 0.69% PYKS 33 0.67% CYP90D1 33 0.67% FNS 29 0.59% CPD/CYP90A1 29 0.59% IO 28 0.57% RAS 28 0.57% PMT 26 0.53% 8HGO 25 0.51% ANR 24 0.49% F3'5'H/CYP75A 22 0.45% CCR 22 0.45% COMT 22 0.45% F5H/CYP84A 21 0.43% BR6OX1/CYP85A1 20 0.41% COR 18 0.37% CYP51G1 18 0.37% LAMT 17 0.35% CPR 17 0.35% AACT 15 0.31% 16OMT 14 0.28% CNMT 14 0.28% HPPR 14 0.28% GGPPS 14 0.28% TYDC_DDC 13 0.26% DFR 13 0.26% ROT3/CYP90C1 13 0.26% FPPS 12 0.24% MPO 11 0.22% CHS 11 0.22% ISY 10 0.2% ANS/LDOX 10 0.2% XMT_MXMT_DXMT 9 0.18% CYP719 9 0.18% SQE 9 0.18% SQS/FDFT1 9 0.18% DET2 8 0.16% CHI 7 0.14% DXS 7 0.14% MVD 7 0.14% CYP80B1 6 0.12% FLS 6 0.12% CCoAOMT 6 0.12% MCT/IspD 6 0.12% SMO1/SMO2 5 0.1% MVK 5 0.1% TDC 3 0.06% CYP80F1 3 0.06% DWF1 3 0.06% FK 3 0.06% HMGR 3 0.06% PMK 3 0.06% HMGS 3 0.06% CMK/IspE 3 0.06% IDI 3 0.06% ADC 2 0.04% CPI1 2 0.04% DWF7 2 0.04% DWF5 2 0.04% HDS/IspG 2 0.04% HDR/IspH 2 0.04% ODC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% HYD1 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 593 21 UGT (235) View species results
Alkaloid pathway 535 23 7DLGT (99) View species results
Phenylpropanoid pathway 400 13 POD (154) View species results
Flavonoid pathway 301 13 UFGT (199) View species results
Rosmarinic acid pathway 163 7 C4H (53) View species results
Steroid pathway 118 12 CAS (55) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1773 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 323 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CMK/IspE
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Gene Pathway Family Confidence Status
neolamarckia_cadamba_evm.model.Contig44.171 Terpenoid CMK/IspE low borderline
neolamarckia_cadamba_evm.model.Contig717.5 Terpenoid CMK/IspE medium pass
neolamarckia_cadamba_evm.model.Contig717.8 Terpenoid CMK/IspE high pass