Neolamarckia cadamba (neolamarckia_cadamba)
Imported from atlas release summary for Neolamarckia cadamba.
2110
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2110
Candidate Genes
C4H
5.94%
C3'H/CYP98A
5.76%
BAHD
5.19%
UGT
5.03%
7DLGT
4.4%
UFGT
4.29%
IFS
3.76%
4CL
3.66%
Other Families
61.97%
More Families (98)
POD
162
3.3%
T3O
157
3.19%
CYP76
151
3.07%
F3H
142
2.89%
STR
100
2.04%
BR6OX2/CYP85A2
97
1.97%
F3'H/CYP75B
95
1.93%
DWF4/CYP90B1
95
1.93%
NMT
87
1.77%
CAD
81
1.65%
CODM/T6ODM
80
1.63%
H6H
71
1.44%
SGD
71
1.44%
TRI/TRII
71
1.44%
CAS
64
1.3%
CSE
62
1.26%
SMT1/SMT2/SMT3
61
1.24%
7DLH
55
1.12%
LAC
53
1.08%
TPS
53
1.08%
GES
52
1.06%
CYP71
52
1.06%
GS
51
1.04%
IFR
45
0.92%
HCT
40
0.81%
T16H
39
0.79%
PAL
39
0.79%
NCS
37
0.75%
TAT
37
0.75%
G8O/G8H
36
0.73%
BBE
35
0.71%
SLS
34
0.69%
PYKS
33
0.67%
CYP90D1
33
0.67%
FNS
29
0.59%
CPD/CYP90A1
29
0.59%
IO
28
0.57%
RAS
28
0.57%
PMT
26
0.53%
8HGO
25
0.51%
ANR
24
0.49%
F3'5'H/CYP75A
22
0.45%
CCR
22
0.45%
COMT
22
0.45%
F5H/CYP84A
21
0.43%
BR6OX1/CYP85A1
20
0.41%
COR
18
0.37%
CYP51G1
18
0.37%
LAMT
17
0.35%
CPR
17
0.35%
AACT
15
0.31%
16OMT
14
0.28%
CNMT
14
0.28%
HPPR
14
0.28%
GGPPS
14
0.28%
TYDC_DDC
13
0.26%
DFR
13
0.26%
ROT3/CYP90C1
13
0.26%
FPPS
12
0.24%
MPO
11
0.22%
CHS
11
0.22%
ISY
10
0.2%
ANS/LDOX
10
0.2%
XMT_MXMT_DXMT
9
0.18%
CYP719
9
0.18%
SQE
9
0.18%
SQS/FDFT1
9
0.18%
DET2
8
0.16%
CHI
7
0.14%
DXS
7
0.14%
MVD
7
0.14%
CYP80B1
6
0.12%
FLS
6
0.12%
CCoAOMT
6
0.12%
MCT/IspD
6
0.12%
SMO1/SMO2
5
0.1%
MVK
5
0.1%
TDC
3
0.06%
CYP80F1
3
0.06%
DWF1
3
0.06%
FK
3
0.06%
HMGR
3
0.06%
PMK
3
0.06%
HMGS
3
0.06%
CMK/IspE
3
0.06%
IDI
3
0.06%
ADC
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
DWF5
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
HYD1
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 593 | 21 | UGT (235) | View species results |
| Alkaloid pathway | 535 | 23 | 7DLGT (99) | View species results |
| Phenylpropanoid pathway | 400 | 13 | POD (154) | View species results |
| Flavonoid pathway | 301 | 13 | UFGT (199) | View species results |
| Rosmarinic acid pathway | 163 | 7 | C4H (53) | View species results |
| Steroid pathway | 118 | 12 | CAS (55) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1773 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 323 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| neolamarckia_cadamba_evm.model.Contig47.44 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig471.202 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig476.18 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig476.19 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig477.135 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig477.199 | Alkaloid | 7DLGT | high | pass |
| neolamarckia_cadamba_evm.model.Contig477.200 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig477.692 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig477.693 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig480.461 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig480.463 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig481.111 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig490.83 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig490.86 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig490.87 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig490.88 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig490.89 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig490.91 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig490.92 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig491.5 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig52.7 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig53.2 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig53.3 | Alkaloid | 7DLGT | high | pass |
| neolamarckia_cadamba_evm.model.Contig54.151 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig54.271 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig54.291 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig555.303 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig555.423 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig565.27 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig583.13 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig61.151 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig61.152 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig63.420 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig63.421 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig63.422 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig631.1 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.1281 | Alkaloid | 7DLGT | high | pass |
| neolamarckia_cadamba_evm.model.Contig66.1443 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.200 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.357 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.383 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig66.384 | Alkaloid | 7DLGT | high | pass |
| neolamarckia_cadamba_evm.model.Contig665.10 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig665.6 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig7.122 | Alkaloid | 7DLGT | high | pass |
| neolamarckia_cadamba_evm.model.Contig7.312 | Alkaloid | 7DLGT | medium | pass |
| neolamarckia_cadamba_evm.model.Contig766.102 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig79.47 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig81.1078 | Alkaloid | 7DLGT | low | borderline |
| neolamarckia_cadamba_evm.model.Contig81.1277 | Alkaloid | 7DLGT | low | borderline |