Neolamarckia cadamba (neolamarckia_cadamba)
Imported from atlas release summary for Neolamarckia cadamba.
2110
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2110
Candidate Genes
C4H
5.94%
C3'H/CYP98A
5.76%
BAHD
5.19%
UGT
5.03%
7DLGT
4.4%
UFGT
4.29%
IFS
3.76%
4CL
3.66%
Other Families
61.97%
More Families (98)
POD
162
3.3%
T3O
157
3.19%
CYP76
151
3.07%
F3H
142
2.89%
STR
100
2.04%
BR6OX2/CYP85A2
97
1.97%
F3'H/CYP75B
95
1.93%
DWF4/CYP90B1
95
1.93%
NMT
87
1.77%
CAD
81
1.65%
CODM/T6ODM
80
1.63%
H6H
71
1.44%
SGD
71
1.44%
TRI/TRII
71
1.44%
CAS
64
1.3%
CSE
62
1.26%
SMT1/SMT2/SMT3
61
1.24%
7DLH
55
1.12%
LAC
53
1.08%
TPS
53
1.08%
GES
52
1.06%
CYP71
52
1.06%
GS
51
1.04%
IFR
45
0.92%
HCT
40
0.81%
T16H
39
0.79%
PAL
39
0.79%
NCS
37
0.75%
TAT
37
0.75%
G8O/G8H
36
0.73%
BBE
35
0.71%
SLS
34
0.69%
PYKS
33
0.67%
CYP90D1
33
0.67%
FNS
29
0.59%
CPD/CYP90A1
29
0.59%
IO
28
0.57%
RAS
28
0.57%
PMT
26
0.53%
8HGO
25
0.51%
ANR
24
0.49%
F3'5'H/CYP75A
22
0.45%
CCR
22
0.45%
COMT
22
0.45%
F5H/CYP84A
21
0.43%
BR6OX1/CYP85A1
20
0.41%
COR
18
0.37%
CYP51G1
18
0.37%
LAMT
17
0.35%
CPR
17
0.35%
AACT
15
0.31%
16OMT
14
0.28%
CNMT
14
0.28%
HPPR
14
0.28%
GGPPS
14
0.28%
TYDC_DDC
13
0.26%
DFR
13
0.26%
ROT3/CYP90C1
13
0.26%
FPPS
12
0.24%
MPO
11
0.22%
CHS
11
0.22%
ISY
10
0.2%
ANS/LDOX
10
0.2%
XMT_MXMT_DXMT
9
0.18%
CYP719
9
0.18%
SQE
9
0.18%
SQS/FDFT1
9
0.18%
DET2
8
0.16%
CHI
7
0.14%
DXS
7
0.14%
MVD
7
0.14%
CYP80B1
6
0.12%
FLS
6
0.12%
CCoAOMT
6
0.12%
MCT/IspD
6
0.12%
SMO1/SMO2
5
0.1%
MVK
5
0.1%
TDC
3
0.06%
CYP80F1
3
0.06%
DWF1
3
0.06%
FK
3
0.06%
HMGR
3
0.06%
PMK
3
0.06%
HMGS
3
0.06%
CMK/IspE
3
0.06%
IDI
3
0.06%
ADC
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
DWF5
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
HYD1
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 593 | 21 | UGT (235) | View species results |
| Alkaloid pathway | 535 | 23 | 7DLGT (99) | View species results |
| Phenylpropanoid pathway | 400 | 13 | POD (154) | View species results |
| Flavonoid pathway | 301 | 13 | UFGT (199) | View species results |
| Rosmarinic acid pathway | 163 | 7 | C4H (53) | View species results |
| Steroid pathway | 118 | 12 | CAS (55) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1773 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 323 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| neolamarckia_cadamba_evm.model.Contig66.552 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.641 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.643 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.644 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig66.862 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig69.100 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig7.249 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig708.56 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig708.57 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig708.58 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig73.81 | Steroid | DWF4/CYP90B1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig81.1087 | Steroid | DWF4/CYP90B1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig81.573 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig81.763 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig81.958 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig84.592 | Steroid | DWF4/CYP90B1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig906.7_evm.model.Contig906.8 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig96.361 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig96.536 | Steroid | DWF4/CYP90B1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig55.275 | Steroid | DWF5 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig967.16 | Steroid | DWF5 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig394.149 | Steroid | DWF7 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig66.878 | Steroid | DWF7 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig7.172 | Steroid | FK | low | borderline |
| neolamarckia_cadamba_evm.model.Contig7.281.1 | Steroid | FK | high | pass |
| neolamarckia_cadamba_evm.model.Contig906.20 | Steroid | FK | high | pass |
| neolamarckia_cadamba_evm.model.Contig421.43 | Steroid | HYD1 | high | pass |
| neolamarckia_cadamba_evm.model.Contig1.43 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig12.106 | Steroid | ROT3/CYP90C1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig151.54 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig259.67 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig259.70 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig267.53 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig280.116 | Steroid | ROT3/CYP90C1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig394.288 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig45.464 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig491.8 | Steroid | ROT3/CYP90C1 | low | borderline |
| neolamarckia_cadamba_evm.model.Contig55.79 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig66.1254 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig797.34 | Steroid | ROT3/CYP90C1 | medium | borderline |
| neolamarckia_cadamba_evm.model.Contig22.224 | Steroid | SMO1/SMO2 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig294.326 | Steroid | SMO1/SMO2 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig296.244 | Steroid | SMO1/SMO2 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig383.499 | Steroid | SMO1/SMO2 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig797.227 | Steroid | SMO1/SMO2 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig1007.8 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig12.492_evm.model.Contig12.493 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig12.494 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig14.287 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| neolamarckia_cadamba_evm.model.Contig154.324 | Steroid | SMT1/SMT2/SMT3 | low | borderline |