PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2395
Candidate Protein Records
2086
Pathway-Level Records
5646
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
origanum_vulgare_984.g43.t1 Terpenoid CYP76 medium borderline
origanum_vulgare_984.g44.t1 Terpenoid CYP76 medium borderline
origanum_vulgare_397.g154.t1 Terpenoid DXR high pass
origanum_vulgare_549.g1.t1 Terpenoid DXR low borderline
origanum_vulgare_549.g1.t1.1.5db0b52e Terpenoid DXR low borderline
origanum_vulgare_549.g1.t1.2.5db0b52e Terpenoid DXR low borderline
origanum_vulgare_549.g1.t1.3.5db0b52e Terpenoid DXR low borderline
origanum_vulgare_126552.g1.t1 Terpenoid DXS medium pass
origanum_vulgare_263.g210.t1 Terpenoid DXS medium pass
origanum_vulgare_645.g70.t1 Terpenoid DXS medium pass
origanum_vulgare_871.g53.t1 Terpenoid DXS medium pass
origanum_vulgare_871.g53.t1.1.5db0b562 Terpenoid DXS medium pass
origanum_vulgare_871.g53.t1.2.5db0b562 Terpenoid DXS medium pass
origanum_vulgare_123544.g4.t1 Terpenoid FPPS medium borderline
origanum_vulgare_125218.g32.t1 Terpenoid FPPS medium pass
origanum_vulgare_125218.g33.t1 Terpenoid FPPS medium pass
origanum_vulgare_125883.g33.t1 Terpenoid FPPS medium pass
origanum_vulgare_127369.g1.t1 Terpenoid FPPS low borderline
origanum_vulgare_230.g99.t1 Terpenoid FPPS medium pass
origanum_vulgare_266.g91.t1 Terpenoid FPPS medium pass
origanum_vulgare_296.g162.t1 Terpenoid FPPS medium pass
origanum_vulgare_311.g10.t1 Terpenoid FPPS medium pass
origanum_vulgare_311.g15.t1 Terpenoid FPPS medium pass
origanum_vulgare_311.g17.t1 Terpenoid FPPS medium pass
origanum_vulgare_311.g3.t1_311.g5.t1 Terpenoid FPPS medium pass
origanum_vulgare_311.g9.t1 Terpenoid FPPS medium pass
origanum_vulgare_444.g11.t1 Terpenoid FPPS medium pass
origanum_vulgare_507.g534.t1 Terpenoid FPPS medium borderline
origanum_vulgare_763.g19.t1 Terpenoid FPPS medium pass
origanum_vulgare_763.g20.t1 Terpenoid FPPS medium pass
origanum_vulgare_763.g21.t1 Terpenoid FPPS low borderline
origanum_vulgare_763.g22.t1 Terpenoid FPPS medium pass
origanum_vulgare_874.g38.t1 Terpenoid FPPS low borderline
origanum_vulgare_874.g39.t1 Terpenoid FPPS medium pass
origanum_vulgare_943.g5.t1 Terpenoid FPPS low borderline
origanum_vulgare_121270.g1.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_126718.g2.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_264.g366.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_295.g13.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_399.g178.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_404.g12.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_597.g9.t1 Terpenoid GGPPS low borderline
origanum_vulgare_816.g92.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_943.g6.t1 Terpenoid GGPPS medium borderline
origanum_vulgare_230.g25.t1 Terpenoid GPPS medium borderline
origanum_vulgare_125883.g128.t1 Terpenoid HDR/IspH high pass
origanum_vulgare_125883.g129.t1 Terpenoid HDR/IspH medium pass
origanum_vulgare_125883.g132.t1 Terpenoid HDR/IspH high pass
origanum_vulgare_125883.g134.t1 Terpenoid HDR/IspH high pass
origanum_vulgare_105507.g1.t1 Terpenoid HDS/IspG low borderline