PlantSME Plant secondary metabolism enzyme database

Origanum vulgare (origanum_vulgare)

Imported from atlas release summary for Origanum vulgare.

2395
Candidate Protein Records
2086
Pathway-Level Records
5646
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 667 19 BAHD (241) View species results
Phenylpropanoid pathway 401 12 POD (131) View species results
Alkaloid pathway 380 24 7DLGT (81) View species results
Rosmarinic acid pathway 280 7 C4H (132) View species results
Flavonoid pathway 243 12 UFGT (164) View species results
Steroid pathway 115 14 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2563 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
origanum_vulgare_817.g11.t1 Terpenoid HDS/IspG high pass
origanum_vulgare_817.g11.t1.1.5db0b54c Terpenoid HDS/IspG high pass
origanum_vulgare_207529.g2.t1 Terpenoid HMGR medium pass
origanum_vulgare_207530.g2.t1 Terpenoid HMGR medium pass
origanum_vulgare_362.g164.t1 Terpenoid HMGR medium pass
origanum_vulgare_405.g26.t1 Terpenoid HMGR medium pass
origanum_vulgare_507.g564.t1 Terpenoid HMGR medium pass
origanum_vulgare_507.g565.t1 Terpenoid HMGR medium pass
origanum_vulgare_791.g31.t1 Terpenoid HMGR medium pass
origanum_vulgare_126834.g1.t1 Terpenoid HMGS high pass
origanum_vulgare_472.g17.t1 Terpenoid HMGS high pass
origanum_vulgare_121271.g8.t1 Terpenoid IDI low borderline
origanum_vulgare_526.g7.t1 Terpenoid IDI medium pass
origanum_vulgare_788.g16.t1 Terpenoid IDI medium pass
origanum_vulgare_1120.g18.t1 Terpenoid MCT/IspD low borderline
origanum_vulgare_783.g2.t1 Terpenoid MCT/IspD high pass
origanum_vulgare_639.g31.t1 Terpenoid MDS/IspF high pass
origanum_vulgare_123442.g1.t1 Terpenoid MVD low borderline
origanum_vulgare_126349.g1.t1 Terpenoid MVD low borderline
origanum_vulgare_507.g172.t1 Terpenoid MVD medium pass
origanum_vulgare_1090.g2.t1 Terpenoid MVK low borderline
origanum_vulgare_256.g27.t1 Terpenoid MVK medium pass
origanum_vulgare_304.g14.t1 Terpenoid MVK low borderline
origanum_vulgare_476.g307.t1 Terpenoid MVK low borderline
origanum_vulgare_826.g47.t1 Terpenoid MVK low borderline
origanum_vulgare_119106.g6.t1 Terpenoid PMK medium pass
origanum_vulgare_700.g16.t1 Terpenoid PMK medium pass
origanum_vulgare_111449.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_111513.g3.t1 Terpenoid TPS medium pass
origanum_vulgare_111513.g3.t1.1.5db0b4a9 Terpenoid TPS medium pass
origanum_vulgare_111513.g3.t1.2.5db0b4a9 Terpenoid TPS medium pass
origanum_vulgare_111513.g3.t1.3.5db0b4a9 Terpenoid TPS medium pass
origanum_vulgare_112136.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_113170.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_115459.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_116723.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_116723.g3.t1 Terpenoid TPS medium pass
origanum_vulgare_117989.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_119373.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_119373.g3.t1 Terpenoid TPS medium pass
origanum_vulgare_120292.g3.t1 Terpenoid TPS medium pass
origanum_vulgare_122263.g5.t1 Terpenoid TPS medium pass
origanum_vulgare_122536.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_122936.g2.t1 Terpenoid TPS medium pass
origanum_vulgare_123796.g3.t1 Terpenoid TPS medium pass
origanum_vulgare_125018.g25.t1 Terpenoid TPS medium pass
origanum_vulgare_125135.g4.t1 Terpenoid TPS medium pass
origanum_vulgare_125482.g5.t1 Terpenoid TPS medium pass
origanum_vulgare_125655.g1.t1 Terpenoid TPS medium pass
origanum_vulgare_126987.g4.t1 Terpenoid TPS medium pass