PlantSME Plant secondary metabolism enzyme database

Oryza punctata (oryza_punctata)

Imported from atlas release summary for Oryza punctata.

1726
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.24% Alkaloid pathway 23.17% Flavonoid pathway 16.57% Phenylpropanoid pathway 15.47% Rosmarinic acid pathway 8.29% Steroid pathway 6.26%
Family Distribution
BAHD 6.09% C4H 6.0% C3'H/CYP98A 5.85% UGT 4.13% 7DLGT 3.81% 4CL 3.77% UFGT 3.73% T3O 3.32%
Other Families 63.3%
More Families (97)
CYP76 149 3.17% IFS 131 2.79% F3'H/CYP75B 128 2.73% POD 125 2.66% NMT 112 2.38% BR6OX2/CYP85A2 111 2.36% STR 101 2.15% DWF4/CYP90B1 100 2.13% F3H 99 2.11% CYP71 95 2.02% SMT1/SMT2/SMT3 85 1.81% CAD 69 1.47% SGD 59 1.26% PYKS 59 1.26% CODM/T6ODM 51 1.09% CAS 50 1.06% IFR 49 1.04% CCR 49 1.04% TPS 49 1.04% G8O/G8H 47 1.0% ANR 46 0.98% TRI/TRII 44 0.94% T16H 43 0.92% PAL 42 0.89% CSE 42 0.89% GES 41 0.87% H6H 41 0.87% NCS 39 0.83% SLS 38 0.81% HCT 38 0.81% COMT 37 0.79% FNS 36 0.77% LAC 36 0.77% PMT 35 0.75% F5H/CYP84A 35 0.75% RAS 35 0.75% CYP51G1 34 0.72% CHS 32 0.68% 16OMT 31 0.66% DFR 31 0.66% CYP90D1 30 0.64% GS 28 0.6% F3'5'H/CYP75A 23 0.49% 8HGO 22 0.47% 7DLH 21 0.45% CPD/CYP90A1 21 0.45% CNMT 18 0.38% ANS/LDOX 17 0.36% BBE 15 0.32% TAT 15 0.32% BR6OX1/CYP85A1 15 0.32% COR 14 0.3% LAMT 14 0.3% MPO 13 0.28% CPR 13 0.28% IO 11 0.23% ROT3/CYP90C1 10 0.21% SQS/FDFT1 10 0.21% GGPPS 10 0.21% FPPS 10 0.21% MCT/IspD 10 0.21% TYDC_DDC 9 0.19% CYP80B1 9 0.19% MVD 9 0.19% XMT_MXMT_DXMT 8 0.17% AACT 8 0.17% CCoAOMT 7 0.15% HPPR 7 0.15% SMO1/SMO2 6 0.13% MVK 6 0.13% DXS 6 0.13% CYP80F1 5 0.11% CYP719 5 0.11% 6OMT_4OMT_SOMT 5 0.11% MDS/IspF 5 0.11% PMK 5 0.11% HMGS 5 0.11% ISY 4 0.09% ADC 4 0.09% CHI 4 0.09% HYD1 4 0.09% DWF1 4 0.09% FLS 3 0.06% DET2 3 0.06% SQE 3 0.06% CMK/IspE 3 0.06% HDS/IspG 3 0.06% HMGR 3 0.06% ODC 2 0.04% TDC 2 0.04% DWF7 2 0.04% FK 2 0.04% DWF5 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% CPI1 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 522 19 BAHD (204) View species results
Alkaloid pathway 400 24 7DLGT (64) View species results
Flavonoid pathway 286 12 UFGT (158) View species results
Phenylpropanoid pathway 267 11 POD (97) View species results
Rosmarinic acid pathway 143 7 C4H (63) View species results
Steroid pathway 108 13 SMT1/SMT2/SMT3 (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 359 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status
OPUNC04G17170.1 Alkaloid 6OMT_4OMT_SOMT low borderline
OPUNC07G12130.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
OPUNC10G00050.1 Alkaloid 6OMT_4OMT_SOMT medium pass
OPUNC11G09640.1 Alkaloid 6OMT_4OMT_SOMT low borderline
OPUNC11G13250.3 Alkaloid 6OMT_4OMT_SOMT medium borderline