Oryza punctata (oryza_punctata)
Imported from atlas release summary for Oryza punctata.
1726
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1726
Candidate Genes
BAHD
6.09%
C4H
6.0%
C3'H/CYP98A
5.85%
UGT
4.13%
7DLGT
3.81%
4CL
3.77%
UFGT
3.73%
T3O
3.32%
Other Families
63.3%
More Families (97)
CYP76
149
3.17%
IFS
131
2.79%
F3'H/CYP75B
128
2.73%
POD
125
2.66%
NMT
112
2.38%
BR6OX2/CYP85A2
111
2.36%
STR
101
2.15%
DWF4/CYP90B1
100
2.13%
F3H
99
2.11%
CYP71
95
2.02%
SMT1/SMT2/SMT3
85
1.81%
CAD
69
1.47%
SGD
59
1.26%
PYKS
59
1.26%
CODM/T6ODM
51
1.09%
CAS
50
1.06%
IFR
49
1.04%
CCR
49
1.04%
TPS
49
1.04%
G8O/G8H
47
1.0%
ANR
46
0.98%
TRI/TRII
44
0.94%
T16H
43
0.92%
PAL
42
0.89%
CSE
42
0.89%
GES
41
0.87%
H6H
41
0.87%
NCS
39
0.83%
SLS
38
0.81%
HCT
38
0.81%
COMT
37
0.79%
FNS
36
0.77%
LAC
36
0.77%
PMT
35
0.75%
F5H/CYP84A
35
0.75%
RAS
35
0.75%
CYP51G1
34
0.72%
CHS
32
0.68%
16OMT
31
0.66%
DFR
31
0.66%
CYP90D1
30
0.64%
GS
28
0.6%
F3'5'H/CYP75A
23
0.49%
8HGO
22
0.47%
7DLH
21
0.45%
CPD/CYP90A1
21
0.45%
CNMT
18
0.38%
ANS/LDOX
17
0.36%
BBE
15
0.32%
TAT
15
0.32%
BR6OX1/CYP85A1
15
0.32%
COR
14
0.3%
LAMT
14
0.3%
MPO
13
0.28%
CPR
13
0.28%
IO
11
0.23%
ROT3/CYP90C1
10
0.21%
SQS/FDFT1
10
0.21%
GGPPS
10
0.21%
FPPS
10
0.21%
MCT/IspD
10
0.21%
TYDC_DDC
9
0.19%
CYP80B1
9
0.19%
MVD
9
0.19%
XMT_MXMT_DXMT
8
0.17%
AACT
8
0.17%
CCoAOMT
7
0.15%
HPPR
7
0.15%
SMO1/SMO2
6
0.13%
MVK
6
0.13%
DXS
6
0.13%
CYP80F1
5
0.11%
CYP719
5
0.11%
6OMT_4OMT_SOMT
5
0.11%
MDS/IspF
5
0.11%
PMK
5
0.11%
HMGS
5
0.11%
ISY
4
0.09%
ADC
4
0.09%
CHI
4
0.09%
HYD1
4
0.09%
DWF1
4
0.09%
FLS
3
0.06%
DET2
3
0.06%
SQE
3
0.06%
CMK/IspE
3
0.06%
HDS/IspG
3
0.06%
HMGR
3
0.06%
ODC
2
0.04%
TDC
2
0.04%
DWF7
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
CPI1
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 522 | 19 | BAHD (204) | View species results |
| Alkaloid pathway | 400 | 24 | 7DLGT (64) | View species results |
| Flavonoid pathway | 286 | 12 | UFGT (158) | View species results |
| Phenylpropanoid pathway | 267 | 11 | POD (97) | View species results |
| Rosmarinic acid pathway | 143 | 7 | C4H (63) | View species results |
| Steroid pathway | 108 | 13 | SMT1/SMT2/SMT3 (46) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1774 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 359 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OPUNC01G28440.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC01G41800.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OPUNC02G15620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OPUNC02G23350.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC02G23350.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC03G11560.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OPUNC03G11560.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OPUNC03G11570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OPUNC03G13600.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC03G25490.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OPUNC03G25490.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OPUNC03G35560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC03G37110.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC04G02800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC04G02820.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC04G07750.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OPUNC04G09530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC04G12570.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| OPUNC05G02580.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC06G19070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC07G19560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC07G19580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC07G23870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC07G23880.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC07G23890.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC07G23900.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC07G23910.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC07G23930.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC07G23930.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC07G23930.3 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC07G23930.4 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| OPUNC07G25580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC09G01250.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| OPUNC09G11260.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OPUNC09G11260.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OPUNC09G11260.3 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| OPUNC10G15950.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OPUNC10G15950.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| OPUNC11G08740.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OPUNC11G10390.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OPUNC11G10390.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| OPUNC11G12620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| OPUNC11G18020.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| OPUNC12G07080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |