Plagiochasma appendiculatum (plagiochasma_appendiculatum)
Imported from atlas release summary for Plagiochasma appendiculatum.
633
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
633
Candidate Genes
C4H
7.39%
C3'H/CYP98A
7.12%
POD
6.32%
CYP76
4.89%
IFS
4.84%
BAHD
4.62%
T3O
4.14%
4CL
3.51%
Other Families
57.17%
More Families (97)
DWF4/CYP90B1
66
3.51%
NMT
57
3.03%
F3H
43
2.28%
STR
37
1.97%
BR6OX2/CYP85A2
34
1.81%
7DLGT
32
1.7%
F3'H/CYP75B
32
1.7%
UGT
32
1.7%
H6H
31
1.65%
UFGT
28
1.49%
CSE
28
1.49%
CAD
24
1.28%
IFR
22
1.17%
GS
21
1.12%
F3'5'H/CYP75A
21
1.12%
PAL
21
1.12%
TRI/TRII
19
1.01%
RAS
19
1.01%
CODM/T6ODM
18
0.96%
PYKS
18
0.96%
HCT
18
0.96%
IO
17
0.9%
TPS
17
0.9%
COMT
16
0.85%
CAS
16
0.85%
T16H
15
0.8%
SLS
14
0.74%
SGD
14
0.74%
CPD/CYP90A1
14
0.74%
CYP71
14
0.74%
G8O/G8H
13
0.69%
LAMT
13
0.69%
CHS
13
0.69%
COR
12
0.64%
ANR
12
0.64%
BR6OX1/CYP85A1
12
0.64%
SMT1/SMT2/SMT3
12
0.64%
CYP90D1
11
0.58%
ROT3/CYP90C1
11
0.58%
CYP51G1
11
0.58%
CYP80B1
8
0.43%
CYP719
8
0.43%
DFR
8
0.43%
CCR
8
0.43%
TAT
8
0.43%
16OMT
7
0.37%
CNMT
7
0.37%
FNS
7
0.37%
F5H/CYP84A
7
0.37%
NCS
6
0.32%
7DLH
6
0.32%
GES
6
0.32%
AACT
6
0.32%
ANS/LDOX
5
0.27%
CPR
5
0.27%
SQS/FDFT1
5
0.27%
FPPS
5
0.27%
GGPPS
5
0.27%
PMT
4
0.21%
MPO
4
0.21%
8HGO
4
0.21%
CHI
4
0.21%
DXS
4
0.21%
TDC
3
0.16%
XMT_MXMT_DXMT
3
0.16%
ISY
3
0.16%
BBE
3
0.16%
FLS
3
0.16%
LAC
3
0.16%
CCoAOMT
3
0.16%
SQE
3
0.16%
MVD
3
0.16%
MVK
3
0.16%
CYP80F1
2
0.11%
TYDC_DDC
2
0.11%
SMO1/SMO2
2
0.11%
DWF1
2
0.11%
DET2
2
0.11%
HMGS
2
0.11%
DXR
2
0.11%
ADC
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
ODC
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
HYD1
1
0.05%
FK
1
0.05%
PMK
1
0.05%
IDI
1
0.05%
HDR/IspH
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
CMK/IspE
1
0.05%
HMGR
1
0.05%
MCT/IspD
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 194 | 11 | POD (115) | View species results |
| Terpenoid pathway | 146 | 18 | BAHD (50) | View species results |
| Alkaloid pathway | 126 | 18 | T3O (30) | View species results |
| Flavonoid pathway | 69 | 8 | UFGT (25) | View species results |
| Rosmarinic acid pathway | 62 | 7 | C4H (35) | View species results |
| Steroid pathway | 36 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 850 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pappscaffold_60136050 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_60138340 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_60141750 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_60141940 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_60147400 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_60150950 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_60153740 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_60153930 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70156330 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_70158850 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_70159580 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70160150 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70166170 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70166180 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70167130 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70169520 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70169540 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70173290 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70178290 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_70180180 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80181490 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80183330 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80186130 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80187540 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80187690 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80189540 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80190540 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80192330 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80192680 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80193180 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80194750 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80195040 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80195960 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80195970 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80199250 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80199700 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80199770 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80199790 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80200100 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80200170 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80201760 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80201870 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80201990 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_80202290 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80203110 | Rosmarinic Acid | C4H | low | borderline |
| Pappscaffold_80203340 | Rosmarinic Acid | C4H | medium | pass |
| Pappscaffold_10007600 | Rosmarinic Acid | CPR | low | borderline |
| Pappscaffold_10017020 | Rosmarinic Acid | CPR | medium | pass |
| Pappscaffold_30048140 | Rosmarinic Acid | CPR | medium | pass |
| Pappscaffold_70155910 | Rosmarinic Acid | CPR | low | borderline |