Plagiochasma appendiculatum (plagiochasma_appendiculatum)
Imported from atlas release summary for Plagiochasma appendiculatum.
922
Candidate Protein Records
633
Pathway-Level Records
1882
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1882
Family-Level Calls
C4H
7.39%
C3'H/CYP98A
7.12%
POD
6.32%
CYP76
4.89%
IFS
4.84%
BAHD
4.62%
T3O
4.14%
4CL
3.51%
Other Families
57.17%
More Families (97)
DWF4/CYP90B1
66
3.51%
NMT
57
3.03%
F3H
43
2.28%
STR
37
1.97%
BR6OX2/CYP85A2
34
1.81%
7DLGT
32
1.7%
F3'H/CYP75B
32
1.7%
UGT
32
1.7%
H6H
31
1.65%
UFGT
28
1.49%
CSE
28
1.49%
CAD
24
1.28%
IFR
22
1.17%
GS
21
1.12%
F3'5'H/CYP75A
21
1.12%
PAL
21
1.12%
TRI/TRII
19
1.01%
RAS
19
1.01%
CODM/T6ODM
18
0.96%
PYKS
18
0.96%
HCT
18
0.96%
IO
17
0.9%
TPS
17
0.9%
COMT
16
0.85%
CAS
16
0.85%
T16H
15
0.8%
SLS
14
0.74%
SGD
14
0.74%
CPD/CYP90A1
14
0.74%
CYP71
14
0.74%
G8O/G8H
13
0.69%
LAMT
13
0.69%
CHS
13
0.69%
COR
12
0.64%
ANR
12
0.64%
BR6OX1/CYP85A1
12
0.64%
SMT1/SMT2/SMT3
12
0.64%
CYP90D1
11
0.58%
ROT3/CYP90C1
11
0.58%
CYP51G1
11
0.58%
CYP80B1
8
0.43%
CYP719
8
0.43%
DFR
8
0.43%
CCR
8
0.43%
TAT
8
0.43%
16OMT
7
0.37%
CNMT
7
0.37%
FNS
7
0.37%
F5H/CYP84A
7
0.37%
NCS
6
0.32%
7DLH
6
0.32%
GES
6
0.32%
AACT
6
0.32%
ANS/LDOX
5
0.27%
CPR
5
0.27%
SQS/FDFT1
5
0.27%
FPPS
5
0.27%
GGPPS
5
0.27%
PMT
4
0.21%
MPO
4
0.21%
8HGO
4
0.21%
CHI
4
0.21%
DXS
4
0.21%
TDC
3
0.16%
XMT_MXMT_DXMT
3
0.16%
ISY
3
0.16%
BBE
3
0.16%
FLS
3
0.16%
LAC
3
0.16%
CCoAOMT
3
0.16%
SQE
3
0.16%
MVD
3
0.16%
MVK
3
0.16%
CYP80F1
2
0.11%
TYDC_DDC
2
0.11%
SMO1/SMO2
2
0.11%
DWF1
2
0.11%
DET2
2
0.11%
HMGS
2
0.11%
DXR
2
0.11%
ADC
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
ODC
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
HYD1
1
0.05%
FK
1
0.05%
PMK
1
0.05%
IDI
1
0.05%
HDR/IspH
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
CMK/IspE
1
0.05%
HMGR
1
0.05%
MCT/IspD
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 194 | 11 | POD (115) | View species results |
| Terpenoid pathway | 146 | 18 | BAHD (50) | View species results |
| Alkaloid pathway | 126 | 18 | T3O (30) | View species results |
| Flavonoid pathway | 69 | 8 | UFGT (25) | View species results |
| Rosmarinic acid pathway | 62 | 7 | C4H (35) | View species results |
| Steroid pathway | 36 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 850 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pappscaffold_60146830 | Alkaloid | PYKS | high | pass |
| Pappscaffold_60150700 | Alkaloid | PYKS | low | borderline |
| Pappscaffold_60150710 | Alkaloid | PYKS | low | borderline |
| Pappscaffold_30050070 | Alkaloid | SGD | medium | pass |
| Pappscaffold_30051520 | Alkaloid | SGD | medium | pass |
| Pappscaffold_30056170 | Alkaloid | SGD | medium | pass |
| Pappscaffold_30067190 | Alkaloid | SGD | low | borderline |
| Pappscaffold_30067210 | Alkaloid | SGD | medium | pass |
| Pappscaffold_30068950 | Alkaloid | SGD | medium | pass |
| Pappscaffold_50100950 | Alkaloid | SGD | low | borderline |
| Pappscaffold_50104990 | Alkaloid | SGD | low | borderline |
| Pappscaffold_50123800 | Alkaloid | SGD | low | borderline |
| Pappscaffold_60133510 | Alkaloid | SGD | low | borderline |
| Pappscaffold_60146220 | Alkaloid | SGD | medium | pass |
| Pappscaffold_60149680 | Alkaloid | SGD | low | borderline |
| Pappscaffold_80184150 | Alkaloid | SGD | medium | pass |
| Pappscaffold_80184200 | Alkaloid | SGD | medium | pass |
| Pappscaffold_10003200 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_10016720 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_30061810 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_40081030 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_410091870 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_410091950 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_50120310 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_60131970 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_60153740 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_70159580 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_70166170 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_70166180 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_70179960 | Alkaloid | SLS | medium | borderline |
| Pappscaffold_80188780 | Alkaloid | SLS | low | borderline |
| Pappscaffold_10005060 | Alkaloid | STR | medium | pass |
| Pappscaffold_10008320 | Alkaloid | STR | low | borderline |
| Pappscaffold_10014510 | Alkaloid | STR | low | borderline |
| Pappscaffold_20020930 | Alkaloid | STR | low | borderline |
| Pappscaffold_20027000 | Alkaloid | STR | low | borderline |
| Pappscaffold_20030220 | Alkaloid | STR | low | borderline |
| Pappscaffold_20039250 | Alkaloid | STR | medium | pass |
| Pappscaffold_30049610 | Alkaloid | STR | medium | pass |
| Pappscaffold_30056570 | Alkaloid | STR | low | borderline |
| Pappscaffold_30058260 | Alkaloid | STR | low | borderline |
| Pappscaffold_30058800 | Alkaloid | STR | medium | pass |
| Pappscaffold_30058820 | Alkaloid | STR | low | borderline |
| Pappscaffold_30065420 | Alkaloid | STR | low | borderline |
| Pappscaffold_40075440 | Alkaloid | STR | medium | pass |
| Pappscaffold_40084540 | Alkaloid | STR | low | borderline |
| Pappscaffold_40088920 | Alkaloid | STR | low | borderline |
| Pappscaffold_50100880 | Alkaloid | STR | medium | pass |
| Pappscaffold_50125250 | Alkaloid | STR | low | borderline |
| Pappscaffold_50125730 | Alkaloid | STR | low | borderline |