PlantSME Plant secondary metabolism enzyme database

Platycodon grandiflorus (platycodon_grandiflorus)

Imported from atlas release summary for Platycodon grandiflorus.

2519
Candidate Protein Records
2177
Pathway-Level Records
5118
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.98% Alkaloid pathway 22.19% Phenylpropanoid pathway 18.83% Flavonoid pathway 14.15% Rosmarinic acid pathway 9.51% Steroid pathway 6.34%
Family Distribution
C4H 6.53% C3'H/CYP98A 5.71% BAHD 5.55% 4CL 5.33% UGT 4.57% UFGT 4.03% 7DLGT 3.89% IFS 3.54%
Other Families 60.86%
More Families (95)
CYP76 166 3.24% POD 165 3.22% T3O 149 2.91% NMT 130 2.54% DWF4/CYP90B1 116 2.27% F3H 115 2.25% STR 113 2.21% F3'H/CYP75B 96 1.88% CAD 78 1.52% BR6OX2/CYP85A2 75 1.47% CAS 74 1.45% SMT1/SMT2/SMT3 73 1.43% H6H 68 1.33% CODM/T6ODM 65 1.27% BBE 63 1.23% CYP71 60 1.17% SGD 59 1.15% LAC 56 1.09% TAT 54 1.06% CSE 51 1.0% 7DLH 50 0.98% TRI/TRII 49 0.96% GS 48 0.94% IFR 47 0.92% HCT 46 0.9% TPS 44 0.86% T16H 43 0.84% IO 41 0.8% CYP90D1 40 0.78% PAL 39 0.76% GES 38 0.74% FNS 38 0.74% ANR 37 0.72% SLS 36 0.7% G8O/G8H 35 0.68% COMT 33 0.64% GGPPS 33 0.64% PYKS 29 0.57% F3'5'H/CYP75A 29 0.57% COR 28 0.55% CCR 28 0.55% CPD/CYP90A1 26 0.51% CYP51G1 26 0.51% PMT 24 0.47% 8HGO 23 0.45% 16OMT 23 0.45% F5H/CYP84A 23 0.45% RAS 21 0.41% NCS 20 0.39% FPPS 20 0.39% ANS/LDOX 18 0.35% BR6OX1/CYP85A1 18 0.35% CPR 17 0.33% ROT3/CYP90C1 14 0.27% DFR 13 0.25% DXS 12 0.23% LAMT 11 0.21% HPPR 11 0.21% MPO 10 0.2% HMGR 9 0.18% CNMT 8 0.16% DET2 8 0.16% ADC 7 0.14% CYP719 7 0.14% SQS/FDFT1 7 0.14% SQE 7 0.14% AACT 7 0.14% ISY 6 0.12% CHS 6 0.12% CCoAOMT 6 0.12% PMK 6 0.12% CHI 5 0.1% MVD 5 0.1% HDS/IspG 5 0.1% CYP80F1 4 0.08% SMO1/SMO2 4 0.08% MVK 4 0.08% IDI 4 0.08% TYDC_DDC 3 0.06% CPI1 3 0.06% DXR 3 0.06% HDR/IspH 3 0.06% CMK/IspE 3 0.06% XMT_MXMT_DXMT 2 0.04% TDC 2 0.04% DWF7 2 0.04% MCT/IspD 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% CYP80B1 1 0.02% FLS 1 0.02% DWF1 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF5 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 631 19 BAHD (233) View species results
Alkaloid pathway 483 20 7DLGT (90) View species results
Phenylpropanoid pathway 410 11 POD (153) View species results
Flavonoid pathway 308 12 UFGT (194) View species results
Rosmarinic acid pathway 207 7 C4H (67) View species results
Steroid pathway 138 13 CAS (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1862 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 351 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Protein/Isoform Record Pathway Family Confidence Status Best Target
PLgraScaffold5080339000.3 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold5360342920.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold6000352090.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold6060352660.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold6060352660.2 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold6060352660.3 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold6170353820.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold6770361040.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
PLgraScaffold7130366190.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold7550371140.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold8540383040.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold9630396550.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PLgraScaffold9730397520.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR