Polytrichum commune (polytrichum_commune)
Imported from atlas release summary for Polytrichum commune.
606
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
606
Candidate Genes
C4H
7.62%
C3'H/CYP98A
6.43%
CYP76
5.42%
4CL
5.25%
BAHD
4.97%
POD
4.01%
NMT
3.33%
IFS
3.1%
Other Families
59.88%
More Families (93)
F3H
49
2.77%
DWF4/CYP90B1
49
2.77%
T3O
46
2.6%
STR
41
2.31%
BR6OX2/CYP85A2
39
2.2%
F3'H/CYP75B
37
2.09%
GS
35
1.98%
UGT
32
1.81%
IFR
31
1.75%
7DLGT
30
1.69%
UFGT
30
1.69%
PYKS
29
1.64%
CODM/T6ODM
28
1.58%
H6H
23
1.3%
SGD
21
1.19%
IO
21
1.19%
PAL
21
1.19%
LAC
21
1.19%
T16H
19
1.07%
F3'5'H/CYP75A
19
1.07%
COMT
19
1.07%
SMT1/SMT2/SMT3
19
1.07%
CHS
18
1.02%
CAD
18
1.02%
CYP71
18
1.02%
G8O/G8H
17
0.96%
FNS
17
0.96%
TRI/TRII
16
0.9%
BR6OX1/CYP85A1
16
0.9%
7DLH
13
0.73%
RAS
11
0.62%
SLS
10
0.56%
CSE
10
0.56%
CYP90D1
10
0.56%
CNMT
9
0.51%
16OMT
9
0.51%
ANR
9
0.51%
HCT
9
0.51%
CPD/CYP90A1
9
0.51%
CYP80B1
8
0.45%
NCS
8
0.45%
CPR
8
0.45%
CAS
8
0.45%
CYP719
7
0.4%
BBE
7
0.4%
F5H/CYP84A
7
0.4%
PMT
6
0.34%
MPO
6
0.34%
TAT
6
0.34%
AACT
6
0.34%
COR
5
0.28%
DFR
5
0.28%
GGPPS
5
0.28%
8HGO
4
0.23%
CHI
4
0.23%
ANS/LDOX
4
0.23%
CCR
4
0.23%
SQS/FDFT1
4
0.23%
DWF1
4
0.23%
DXS
4
0.23%
ADC
3
0.17%
SMO1/SMO2
3
0.17%
CYP51G1
3
0.17%
DWF5
3
0.17%
ROT3/CYP90C1
3
0.17%
CMK/IspE
3
0.17%
FPPS
3
0.17%
TDC
2
0.11%
ODC
2
0.11%
ISY
2
0.11%
LAMT
2
0.11%
TYDC_DDC
2
0.11%
CYP80F1
2
0.11%
FLS
2
0.11%
CCoAOMT
2
0.11%
DET2
2
0.11%
SQE
2
0.11%
HMGS
2
0.11%
HDR/IspH
2
0.11%
HMGR
2
0.11%
MVK
2
0.11%
MCT/IspD
2
0.11%
MVD
2
0.11%
HPPR
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HYD1
1
0.06%
CPI1
1
0.06%
PMK
1
0.06%
MDS/IspF
1
0.06%
DXR
1
0.06%
HDS/IspG
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 153 | 11 | POD (64) | View species results |
| Terpenoid pathway | 151 | 18 | BAHD (58) | View species results |
| Alkaloid pathway | 128 | 16 | NMT (20) | View species results |
| Flavonoid pathway | 75 | 8 | UFGT (29) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (33) | View species results |
| Steroid pathway | 33 | 12 | CAS (8) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 753 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 108 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| POcom1000000340 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| POcom1000001730 | Terpenoid | BAHD | medium | pass | BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH |
| POcom1020005720 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| POcom1020005730 | Terpenoid | BAHD | medium | pass | BAHD__00040__sp_Q41745_LPAT_MAIZE |
| POcom1020006040 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| POcom1020006630 | Terpenoid | BAHD | medium | pass | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| POcom1030007170 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| POcom1050012230 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| POcom1137870014610 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| POcom1137900014700 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| POcom1830029160 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| POcom1830029670 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| POcom1860031000 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| POcom2160044460 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| POcom2170045080 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| POcom2240047930 | Terpenoid | BAHD | low | borderline | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| POcom2340053390 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| POcom2340053940 | Terpenoid | BAHD | medium | pass | BAHD__00092__sp_Q9SU91_LPXA_ARATH |
| POcom2340054190 | Terpenoid | BAHD | medium | pass | BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH |
| POcom2370056680 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| POcom2400060580 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| POcom2500066570 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| POcom2520069040 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| POcom2520070090 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| POcom2540071930 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| POcom2540072260 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| POcom2560073320 | Terpenoid | BAHD | medium | pass | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| POcom2570075720 | Terpenoid | BAHD | medium | pass | BAHD__00067__sp_Q9ASU1_DGAT2_ARATH |
| POcom2640083490 | Terpenoid | BAHD | low | borderline | BAHD__00097__sp_Q9ZV87_NAPES_ARATH |
| POcom2660087070 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| POcom2660087250 | Terpenoid | BAHD | medium | borderline | BAHD__00044__sp_Q56WD9_THIK2_ARATH |
| POcom2670088730 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| POcom2670090940 | Terpenoid | BAHD | medium | pass | BAHD__00063__sp_Q93VV0_ZDHC6_ARATH |
| POcom2690092990 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| POcom2690093090 | Terpenoid | BAHD | medium | pass | BAHD__00014__sp_B9RK42_GPC1_RICCO |
| POcom2700094530 | Terpenoid | BAHD | medium | pass | BAHD__00052__sp_Q8GWG0_GPAT9_ARATH |
| POcom457460095560 | Terpenoid | BAHD | low | borderline | BAHD__00030__sp_O80816_GLC_ARATH |
| POcom462270096100 | Terpenoid | BAHD | low | borderline | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| POcom615740102530 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| POcom640104890 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| POcom660108990 | Terpenoid | BAHD | medium | pass | BAHD__00023__sp_O22975_LPAAT_ARATH |
| POcom690114780 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| POcom700117280 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| POcom700117670 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| POcom700118580 | Terpenoid | BAHD | medium | pass | BAHD__00023__sp_O22975_LPAAT_ARATH |
| POcom700118610 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| POcom710121650 | Terpenoid | BAHD | low | borderline | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| POcom710121660 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| POcom780130430 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| POcom790131750 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |