PlantSME Plant secondary metabolism enzyme database

Polytrichum commune (polytrichum_commune)

Imported from atlas release summary for Polytrichum commune.

606
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.25% Terpenoid pathway 24.92% Alkaloid pathway 21.12% Flavonoid pathway 12.38% Rosmarinic acid pathway 10.89% Steroid pathway 5.45%
Family Distribution
C4H 7.62% C3'H/CYP98A 6.43% CYP76 5.42% 4CL 5.25% BAHD 4.97% POD 4.01% NMT 3.33% IFS 3.1%
Other Families 59.88%
More Families (93)
F3H 49 2.77% DWF4/CYP90B1 49 2.77% T3O 46 2.6% STR 41 2.31% BR6OX2/CYP85A2 39 2.2% F3'H/CYP75B 37 2.09% GS 35 1.98% UGT 32 1.81% IFR 31 1.75% 7DLGT 30 1.69% UFGT 30 1.69% PYKS 29 1.64% CODM/T6ODM 28 1.58% H6H 23 1.3% SGD 21 1.19% IO 21 1.19% PAL 21 1.19% LAC 21 1.19% T16H 19 1.07% F3'5'H/CYP75A 19 1.07% COMT 19 1.07% SMT1/SMT2/SMT3 19 1.07% CHS 18 1.02% CAD 18 1.02% CYP71 18 1.02% G8O/G8H 17 0.96% FNS 17 0.96% TRI/TRII 16 0.9% BR6OX1/CYP85A1 16 0.9% 7DLH 13 0.73% RAS 11 0.62% SLS 10 0.56% CSE 10 0.56% CYP90D1 10 0.56% CNMT 9 0.51% 16OMT 9 0.51% ANR 9 0.51% HCT 9 0.51% CPD/CYP90A1 9 0.51% CYP80B1 8 0.45% NCS 8 0.45% CPR 8 0.45% CAS 8 0.45% CYP719 7 0.4% BBE 7 0.4% F5H/CYP84A 7 0.4% PMT 6 0.34% MPO 6 0.34% TAT 6 0.34% AACT 6 0.34% COR 5 0.28% DFR 5 0.28% GGPPS 5 0.28% 8HGO 4 0.23% CHI 4 0.23% ANS/LDOX 4 0.23% CCR 4 0.23% SQS/FDFT1 4 0.23% DWF1 4 0.23% DXS 4 0.23% ADC 3 0.17% SMO1/SMO2 3 0.17% CYP51G1 3 0.17% DWF5 3 0.17% ROT3/CYP90C1 3 0.17% CMK/IspE 3 0.17% FPPS 3 0.17% TDC 2 0.11% ODC 2 0.11% ISY 2 0.11% LAMT 2 0.11% TYDC_DDC 2 0.11% CYP80F1 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% DET2 2 0.11% SQE 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% HMGR 2 0.11% MVK 2 0.11% MCT/IspD 2 0.11% MVD 2 0.11% HPPR 1 0.06% DWF7 1 0.06% FK 1 0.06% HYD1 1 0.06% CPI1 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06% DXR 1 0.06% HDS/IspG 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 153 11 POD (64) View species results
Terpenoid pathway 151 18 BAHD (58) View species results
Alkaloid pathway 128 16 NMT (20) View species results
Flavonoid pathway 75 8 UFGT (29) View species results
Rosmarinic acid pathway 66 7 C4H (33) View species results
Steroid pathway 33 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 753 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 108 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
POcom1000001980 Alkaloid H6H medium pass
POcom2250048460 Alkaloid H6H medium borderline
POcom2280049730 Alkaloid H6H medium borderline
POcom2380058570 Alkaloid H6H medium borderline
POcom2460063540 Alkaloid H6H medium borderline
POcom2570074850 Alkaloid H6H medium borderline
POcom2630081960 Alkaloid H6H low borderline
POcom607310101320 Alkaloid H6H low borderline
POcom680112670 Alkaloid H6H medium borderline
POcom680112680 Alkaloid H6H medium borderline
POcom700117960 Alkaloid H6H medium borderline
POcom720123230 Alkaloid H6H medium borderline
POcom812270149640 Alkaloid H6H medium pass
POcom813660160640 Alkaloid H6H medium pass
POcom813980164050 Alkaloid H6H medium borderline
POcom814200167560 Alkaloid H6H medium pass
POcom815590186940 Alkaloid H6H medium borderline
POcom816140194140 Alkaloid H6H medium borderline
POcom816190195440 Alkaloid H6H low borderline
POcom817500218470 Alkaloid H6H medium borderline
POcom840240670 Alkaloid H6H medium borderline
POcom967510254470 Alkaloid H6H low borderline
POcom980256510 Alkaloid H6H low borderline