Polytrichum commune (polytrichum_commune)
Imported from atlas release summary for Polytrichum commune.
606
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
606
Candidate Genes
C4H
7.62%
C3'H/CYP98A
6.43%
CYP76
5.42%
4CL
5.25%
BAHD
4.97%
POD
4.01%
NMT
3.33%
IFS
3.1%
Other Families
59.88%
More Families (93)
F3H
49
2.77%
DWF4/CYP90B1
49
2.77%
T3O
46
2.6%
STR
41
2.31%
BR6OX2/CYP85A2
39
2.2%
F3'H/CYP75B
37
2.09%
GS
35
1.98%
UGT
32
1.81%
IFR
31
1.75%
7DLGT
30
1.69%
UFGT
30
1.69%
PYKS
29
1.64%
CODM/T6ODM
28
1.58%
H6H
23
1.3%
SGD
21
1.19%
IO
21
1.19%
PAL
21
1.19%
LAC
21
1.19%
T16H
19
1.07%
F3'5'H/CYP75A
19
1.07%
COMT
19
1.07%
SMT1/SMT2/SMT3
19
1.07%
CHS
18
1.02%
CAD
18
1.02%
CYP71
18
1.02%
G8O/G8H
17
0.96%
FNS
17
0.96%
TRI/TRII
16
0.9%
BR6OX1/CYP85A1
16
0.9%
7DLH
13
0.73%
RAS
11
0.62%
SLS
10
0.56%
CSE
10
0.56%
CYP90D1
10
0.56%
CNMT
9
0.51%
16OMT
9
0.51%
ANR
9
0.51%
HCT
9
0.51%
CPD/CYP90A1
9
0.51%
CYP80B1
8
0.45%
NCS
8
0.45%
CPR
8
0.45%
CAS
8
0.45%
CYP719
7
0.4%
BBE
7
0.4%
F5H/CYP84A
7
0.4%
PMT
6
0.34%
MPO
6
0.34%
TAT
6
0.34%
AACT
6
0.34%
COR
5
0.28%
DFR
5
0.28%
GGPPS
5
0.28%
8HGO
4
0.23%
CHI
4
0.23%
ANS/LDOX
4
0.23%
CCR
4
0.23%
SQS/FDFT1
4
0.23%
DWF1
4
0.23%
DXS
4
0.23%
ADC
3
0.17%
SMO1/SMO2
3
0.17%
CYP51G1
3
0.17%
DWF5
3
0.17%
ROT3/CYP90C1
3
0.17%
CMK/IspE
3
0.17%
FPPS
3
0.17%
TDC
2
0.11%
ODC
2
0.11%
ISY
2
0.11%
LAMT
2
0.11%
TYDC_DDC
2
0.11%
CYP80F1
2
0.11%
FLS
2
0.11%
CCoAOMT
2
0.11%
DET2
2
0.11%
SQE
2
0.11%
HMGS
2
0.11%
HDR/IspH
2
0.11%
HMGR
2
0.11%
MVK
2
0.11%
MCT/IspD
2
0.11%
MVD
2
0.11%
HPPR
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HYD1
1
0.06%
CPI1
1
0.06%
PMK
1
0.06%
MDS/IspF
1
0.06%
DXR
1
0.06%
HDS/IspG
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 153 | 11 | POD (64) | View species results |
| Terpenoid pathway | 151 | 18 | BAHD (58) | View species results |
| Alkaloid pathway | 128 | 16 | NMT (20) | View species results |
| Flavonoid pathway | 75 | 8 | UFGT (29) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (33) | View species results |
| Steroid pathway | 33 | 12 | CAS (8) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 753 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 108 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| POcom1130013930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom1400018970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom1640024660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2070040930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2130043020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2160044220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2450063250 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2540071900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2640083750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom2640083770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom640103430 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom670111180 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom700115910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom700118340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom730124360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom751930126610 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom780129450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom780130020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom796810133650 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom809860142900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom810143950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom811430147320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom813410157210 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom813980164040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom814360170070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom814360170150 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom814360170470 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom814700174440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom815100179660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom816550198150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom817030206130 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom817240209820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom817380212580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom817450215360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom817680222480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom817680222600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom817970231710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom818060235810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom850242230 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| POcom880245790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| POcom980255650 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |