Polytrichum commune (polytrichum_commune)
Imported from atlas release summary for Polytrichum commune.
606
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
606
Candidate Genes
C4H
7.62%
C3'H/CYP98A
6.43%
CYP76
5.42%
4CL
5.25%
BAHD
4.97%
POD
4.01%
NMT
3.33%
IFS
3.1%
Other Families
59.88%
More Families (93)
F3H
49
2.77%
DWF4/CYP90B1
49
2.77%
T3O
46
2.6%
STR
41
2.31%
BR6OX2/CYP85A2
39
2.2%
F3'H/CYP75B
37
2.09%
GS
35
1.98%
UGT
32
1.81%
IFR
31
1.75%
7DLGT
30
1.69%
UFGT
30
1.69%
PYKS
29
1.64%
CODM/T6ODM
28
1.58%
H6H
23
1.3%
SGD
21
1.19%
IO
21
1.19%
PAL
21
1.19%
LAC
21
1.19%
T16H
19
1.07%
F3'5'H/CYP75A
19
1.07%
COMT
19
1.07%
SMT1/SMT2/SMT3
19
1.07%
CHS
18
1.02%
CAD
18
1.02%
CYP71
18
1.02%
G8O/G8H
17
0.96%
FNS
17
0.96%
TRI/TRII
16
0.9%
BR6OX1/CYP85A1
16
0.9%
7DLH
13
0.73%
RAS
11
0.62%
SLS
10
0.56%
CSE
10
0.56%
CYP90D1
10
0.56%
CNMT
9
0.51%
16OMT
9
0.51%
ANR
9
0.51%
HCT
9
0.51%
CPD/CYP90A1
9
0.51%
CYP80B1
8
0.45%
NCS
8
0.45%
CPR
8
0.45%
CAS
8
0.45%
CYP719
7
0.4%
BBE
7
0.4%
F5H/CYP84A
7
0.4%
PMT
6
0.34%
MPO
6
0.34%
TAT
6
0.34%
AACT
6
0.34%
COR
5
0.28%
DFR
5
0.28%
GGPPS
5
0.28%
8HGO
4
0.23%
CHI
4
0.23%
ANS/LDOX
4
0.23%
CCR
4
0.23%
SQS/FDFT1
4
0.23%
DWF1
4
0.23%
DXS
4
0.23%
ADC
3
0.17%
SMO1/SMO2
3
0.17%
CYP51G1
3
0.17%
DWF5
3
0.17%
ROT3/CYP90C1
3
0.17%
CMK/IspE
3
0.17%
FPPS
3
0.17%
TDC
2
0.11%
ODC
2
0.11%
ISY
2
0.11%
LAMT
2
0.11%
TYDC_DDC
2
0.11%
CYP80F1
2
0.11%
FLS
2
0.11%
CCoAOMT
2
0.11%
DET2
2
0.11%
SQE
2
0.11%
HMGS
2
0.11%
HDR/IspH
2
0.11%
HMGR
2
0.11%
MVK
2
0.11%
MCT/IspD
2
0.11%
MVD
2
0.11%
HPPR
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HYD1
1
0.06%
CPI1
1
0.06%
PMK
1
0.06%
MDS/IspF
1
0.06%
DXR
1
0.06%
HDS/IspG
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 153 | 11 | POD (64) | View species results |
| Terpenoid pathway | 151 | 18 | BAHD (58) | View species results |
| Alkaloid pathway | 128 | 16 | NMT (20) | View species results |
| Flavonoid pathway | 75 | 8 | UFGT (29) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (33) | View species results |
| Steroid pathway | 33 | 12 | CAS (8) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 753 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 108 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| POcom1020006730 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| POcom1030007230 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| POcom1050012250 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| POcom1270016640 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| POcom1640024510 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| POcom1640024680 | Phenylpropanoid | POD | medium | pass | POD__00008__sp_P52574_REHY_SYNRU |
| POcom1690026660 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom1910034590 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom1940035720 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| POcom1990037610 | Phenylpropanoid | POD | low | borderline | POD__00018__sp_Q8H0V5_OCP3_ARATH |
| POcom2040039410 | Phenylpropanoid | POD | medium | pass | POD__00014__sp_Q4W1I9_PER2_ZINEL |
| POcom2130042850 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| POcom2140043490 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| POcom2170044950 | Phenylpropanoid | POD | low | borderline | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| POcom2300050420 | Phenylpropanoid | POD | medium | pass | POD__00017__sp_Q75SY5_PRXQ_GENTR |
| POcom2300050520 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| POcom2340053770 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| POcom2340053820 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| POcom2420061880 | Phenylpropanoid | POD | medium | pass | POD__00023__sp_Q9M7T0_PRX2F_ARATH |
| POcom2500067080 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| POcom2500067250 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| POcom2530071450 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| POcom2530071470 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| POcom2540071920 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| POcom2550072770 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom2590077710 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| POcom2650085590 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| POcom650107180 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| POcom650107640 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| POcom660109370 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom680112710 | Phenylpropanoid | POD | low | borderline | POD__00023__sp_Q9M7T0_PRX2F_ARATH |
| POcom680113240 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| POcom680113250 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| POcom690115110 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| POcom690115370 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| POcom700116870 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| POcom730123830 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| POcom750126400 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom792860132620 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| POcom793190132730 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| POcom800134920 | Phenylpropanoid | POD | low | borderline | POD__00003__sp_A9PCL4_PRX2_POPTR |
| POcom801190135570 | Phenylpropanoid | POD | medium | pass | POD__00017__sp_Q75SY5_PRXQ_GENTR |
| POcom810120144250 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom811040146380 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| POcom813580160410 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| POcom814060166170 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom814130166730 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| POcom815100179180 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| POcom815190180440 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| POcom815400183200 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |