PlantSME Plant secondary metabolism enzyme database

Porphyra umbilicalis (porphyra_umbilicalis)

Imported from atlas release summary for Porphyra umbilicalis.

70
Candidate Genes
71
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.86% Alkaloid pathway 24.29% Phenylpropanoid pathway 15.71% Steroid pathway 12.86% Rosmarinic acid pathway 11.43% Flavonoid pathway 2.86%
Family Distribution
4CL 7.93% C4H 6.17% BAHD 6.17% C3'H/CYP98A 5.73% POD 4.85% IFR 3.96% NMT 3.52% CNMT 3.52%
Other Families 58.15%
More Families (63)
GS 8 3.52% T3O 7 3.08% CYP76 6 2.64% STR 5 2.2% CYP90D1 5 2.2% DWF4/CYP90B1 5 2.2% CYP71 5 2.2% F3'H/CYP75B 4 1.76% SLS 3 1.32% TRI/TRII 3 1.32% IFS 3 1.32% HPPR 3 1.32% CPR 3 1.32% MCT/IspD 3 1.32% SGD 2 0.88% T16H 2 0.88% G8O/G8H 2 0.88% 8HGO 2 0.88% CYP719 2 0.88% F3'5'H/CYP75A 2 0.88% FNS 2 0.88% CSE 2 0.88% CAD 2 0.88% COMT 2 0.88% CPD/CYP90A1 2 0.88% SMT1/SMT2/SMT3 2 0.88% SQS/FDFT1 2 0.88% SMO1/SMO2 2 0.88% CAS 2 0.88% DWF1 2 0.88% DXS 2 0.88% FPPS 2 0.88% HMGS 2 0.88% AACT 2 0.88% CYP80B1 1 0.44% GES 1 0.44% TYDC_DDC 1 0.44% ODC 1 0.44% COR 1 0.44% PMT 1 0.44% PYKS 1 0.44% MPO 1 0.44% 16OMT 1 0.44% BBE 1 0.44% DFR 1 0.44% UFGT 1 0.44% TAT 1 0.44% FK 1 0.44% BR6OX2/CYP85A2 1 0.44% SQE 1 0.44% CYP51G1 1 0.44% DET2 1 0.44% DWF5 1 0.44% ROT3/CYP90C1 1 0.44% DWF7 1 0.44% PMK 1 0.44% IDI 1 0.44% MVK 1 0.44% DXR 1 0.44% GGPPS 1 0.44% HDS/IspG 1 0.44% HDR/IspH 1 0.44% UGT 1 0.44%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 23 10 BAHD (8) View species results
Alkaloid pathway 17 8 GS (5) View species results
Phenylpropanoid pathway 11 2 POD (9) View species results
Steroid pathway 9 7 CAS (2) View species results
Rosmarinic acid pathway 8 4 CPR (3) View species results
Flavonoid pathway 2 1 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 19 79 BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 1 14 BAHD
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Pumbscaffold_8160122010.1 Alkaloid 16OMT low borderline
Pumbscaffold_2990065770.1 Alkaloid 8HGO medium borderline
Pumbscaffold_510096490.1 Alkaloid 8HGO low borderline
Pumbscaffold_8350123210.1 Alkaloid BBE low borderline
Pumbscaffold_1430016610.1 Alkaloid CNMT low borderline
Pumbscaffold_1640023760.1 Alkaloid CNMT low borderline
Pumbscaffold_1640023850.1 Alkaloid CNMT low borderline
Pumbscaffold_1650024190.1 Alkaloid CNMT medium pass
Pumbscaffold_3930082820.1 Alkaloid CNMT low borderline
Pumbscaffold_4260086670.1 Alkaloid CNMT medium pass
Pumbscaffold_4450088700.1 Alkaloid CNMT low borderline
Pumbscaffold_4510089240.1 Alkaloid CNMT low borderline
Pumbscaffold_2250043930.1 Alkaloid COR medium pass
Pumbscaffold_3130070120.1 Alkaloid CYP719 medium borderline
Pumbscaffold_4000083580.1 Alkaloid CYP719 medium borderline
Pumbscaffold_1110004420.1 Alkaloid CYP80B1 medium borderline
Pumbscaffold_2690057820.1 Alkaloid G8O/G8H medium borderline
Pumbscaffold_4710091490.1 Alkaloid G8O/G8H medium borderline
Pumbscaffold_140014490.1 Alkaloid GES low borderline
Pumbscaffold_19960034480.1 Alkaloid GS low borderline
Pumbscaffold_2840061710.1 Alkaloid GS medium pass
Pumbscaffold_2840061710.2 Alkaloid GS medium pass
Pumbscaffold_31450070410.1 Alkaloid GS low borderline
Pumbscaffold_520098020.1 Alkaloid GS low borderline
Pumbscaffold_680111490.1 Alkaloid GS medium pass
Pumbscaffold_680111490.2 Alkaloid GS medium pass
Pumbscaffold_680111490.3 Alkaloid GS medium pass
Pumbscaffold_720115550.1 Alkaloid MPO low borderline
Pumbscaffold_1010000110.1 Alkaloid NMT low borderline
Pumbscaffold_2040035770.1 Alkaloid NMT low borderline
Pumbscaffold_2430050290.1 Alkaloid NMT medium pass
Pumbscaffold_3810081390.1 Alkaloid NMT medium pass
Pumbscaffold_4970094540.1 Alkaloid NMT low borderline
Pumbscaffold_5060096060.1 Alkaloid NMT low borderline
Pumbscaffold_6450109070.1 Alkaloid NMT medium borderline
Pumbscaffold_6450109070.2 Alkaloid NMT medium borderline
Pumbscaffold_2230043440.1 Alkaloid ODC medium pass
Pumbscaffold_2340047410.1 Alkaloid PMT medium borderline
Pumbscaffold_330074220.1 Alkaloid PYKS low borderline
Pumbscaffold_140014960.1 Alkaloid SGD medium pass
Pumbscaffold_1670025380.1 Alkaloid SGD low borderline
Pumbscaffold_2340047240.1 Alkaloid SLS low borderline
Pumbscaffold_2340047280.1 Alkaloid SLS low borderline
Pumbscaffold_27490060250.1 Alkaloid SLS low borderline
Pumbscaffold_13320012020.1 Alkaloid STR low borderline
Pumbscaffold_14650017730.1 Alkaloid STR low borderline
Pumbscaffold_4220086290.1 Alkaloid STR low borderline
Pumbscaffold_4530089590.1 Alkaloid STR low borderline
Pumbscaffold_5010095240.1 Alkaloid STR low borderline
Pumbscaffold_2510052460.1 Alkaloid T16H medium borderline