Porphyra umbilicalis (porphyra_umbilicalis)
Imported from atlas release summary for Porphyra umbilicalis.
70
Candidate Genes
71
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
70
Candidate Genes
4CL
7.93%
C4H
6.17%
BAHD
6.17%
C3'H/CYP98A
5.73%
POD
4.85%
IFR
3.96%
NMT
3.52%
CNMT
3.52%
Other Families
58.15%
More Families (63)
GS
8
3.52%
T3O
7
3.08%
CYP76
6
2.64%
STR
5
2.2%
CYP90D1
5
2.2%
DWF4/CYP90B1
5
2.2%
CYP71
5
2.2%
F3'H/CYP75B
4
1.76%
SLS
3
1.32%
TRI/TRII
3
1.32%
IFS
3
1.32%
HPPR
3
1.32%
CPR
3
1.32%
MCT/IspD
3
1.32%
SGD
2
0.88%
T16H
2
0.88%
G8O/G8H
2
0.88%
8HGO
2
0.88%
CYP719
2
0.88%
F3'5'H/CYP75A
2
0.88%
FNS
2
0.88%
CSE
2
0.88%
CAD
2
0.88%
COMT
2
0.88%
CPD/CYP90A1
2
0.88%
SMT1/SMT2/SMT3
2
0.88%
SQS/FDFT1
2
0.88%
SMO1/SMO2
2
0.88%
CAS
2
0.88%
DWF1
2
0.88%
DXS
2
0.88%
FPPS
2
0.88%
HMGS
2
0.88%
AACT
2
0.88%
CYP80B1
1
0.44%
GES
1
0.44%
TYDC_DDC
1
0.44%
ODC
1
0.44%
COR
1
0.44%
PMT
1
0.44%
PYKS
1
0.44%
MPO
1
0.44%
16OMT
1
0.44%
BBE
1
0.44%
DFR
1
0.44%
UFGT
1
0.44%
TAT
1
0.44%
FK
1
0.44%
BR6OX2/CYP85A2
1
0.44%
SQE
1
0.44%
CYP51G1
1
0.44%
DET2
1
0.44%
DWF5
1
0.44%
ROT3/CYP90C1
1
0.44%
DWF7
1
0.44%
PMK
1
0.44%
IDI
1
0.44%
MVK
1
0.44%
DXR
1
0.44%
GGPPS
1
0.44%
HDS/IspG
1
0.44%
HDR/IspH
1
0.44%
UGT
1
0.44%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 23 | 10 | BAHD (8) | View species results |
| Alkaloid pathway | 17 | 8 | GS (5) | View species results |
| Phenylpropanoid pathway | 11 | 2 | POD (9) | View species results |
| Steroid pathway | 9 | 7 | CAS (2) | View species results |
| Rosmarinic acid pathway | 8 | 4 | CPR (3) | View species results |
| Flavonoid pathway | 2 | 1 | 4CL (2) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 19 | 79 | BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 1 | 14 | BAHD |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pumbscaffold_14130016190.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Pumbscaffold_5100096710.1 | Flavonoid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Pumbscaffold_570103900.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Pumbscaffold_7490117910.1 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Pumbscaffold_8100121930.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Pumbscaffold_990131050.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Pumbscaffold_14130016190.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Pumbscaffold_5100096710.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Pumbscaffold_570103900.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Pumbscaffold_7490117910.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Pumbscaffold_8100121930.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Pumbscaffold_990131050.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Pumbscaffold_14130016190.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Pumbscaffold_5100096710.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Pumbscaffold_570103900.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Pumbscaffold_7490117910.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Pumbscaffold_8100121930.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Pumbscaffold_990131050.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |