PlantSME Plant secondary metabolism enzyme database

Porphyra umbilicalis (porphyra_umbilicalis)

Imported from atlas release summary for Porphyra umbilicalis.

70
Candidate Genes
71
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.86% Alkaloid pathway 24.29% Phenylpropanoid pathway 15.71% Steroid pathway 12.86% Rosmarinic acid pathway 11.43% Flavonoid pathway 2.86%
Family Distribution
4CL 7.93% C4H 6.17% BAHD 6.17% C3'H/CYP98A 5.73% POD 4.85% IFR 3.96% NMT 3.52% CNMT 3.52%
Other Families 58.15%
More Families (63)
GS 8 3.52% T3O 7 3.08% CYP76 6 2.64% STR 5 2.2% CYP90D1 5 2.2% DWF4/CYP90B1 5 2.2% CYP71 5 2.2% F3'H/CYP75B 4 1.76% SLS 3 1.32% TRI/TRII 3 1.32% IFS 3 1.32% HPPR 3 1.32% CPR 3 1.32% MCT/IspD 3 1.32% SGD 2 0.88% T16H 2 0.88% G8O/G8H 2 0.88% 8HGO 2 0.88% CYP719 2 0.88% F3'5'H/CYP75A 2 0.88% FNS 2 0.88% CSE 2 0.88% CAD 2 0.88% COMT 2 0.88% CPD/CYP90A1 2 0.88% SMT1/SMT2/SMT3 2 0.88% SQS/FDFT1 2 0.88% SMO1/SMO2 2 0.88% CAS 2 0.88% DWF1 2 0.88% DXS 2 0.88% FPPS 2 0.88% HMGS 2 0.88% AACT 2 0.88% CYP80B1 1 0.44% GES 1 0.44% TYDC_DDC 1 0.44% ODC 1 0.44% COR 1 0.44% PMT 1 0.44% PYKS 1 0.44% MPO 1 0.44% 16OMT 1 0.44% BBE 1 0.44% DFR 1 0.44% UFGT 1 0.44% TAT 1 0.44% FK 1 0.44% BR6OX2/CYP85A2 1 0.44% SQE 1 0.44% CYP51G1 1 0.44% DET2 1 0.44% DWF5 1 0.44% ROT3/CYP90C1 1 0.44% DWF7 1 0.44% PMK 1 0.44% IDI 1 0.44% MVK 1 0.44% DXR 1 0.44% GGPPS 1 0.44% HDS/IspG 1 0.44% HDR/IspH 1 0.44% UGT 1 0.44%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 23 10 BAHD (8) View species results
Alkaloid pathway 17 8 GS (5) View species results
Phenylpropanoid pathway 11 2 POD (9) View species results
Steroid pathway 9 7 CAS (2) View species results
Rosmarinic acid pathway 8 4 CPR (3) View species results
Flavonoid pathway 2 1 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 19 79 BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 1 14 BAHD
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
Pumbscaffold_1110004540.1 Terpenoid BAHD medium pass BAHD__00072__sp_Q9FEQ0_GPAT1_CUCMO
Pumbscaffold_1180007370.1 Terpenoid BAHD low borderline BAHD__00048__sp_Q5M757_ZDH15_ARATH
Pumbscaffold_2050036350.1 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Pumbscaffold_2160039860.1 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
Pumbscaffold_2250043990.1 Terpenoid BAHD low borderline BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Pumbscaffold_2330047100.1 Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
Pumbscaffold_2330047110.1 Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
Pumbscaffold_2930064560.1 Terpenoid BAHD low borderline BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Pumbscaffold_2980065590.1 Terpenoid BAHD low borderline BAHD__00014__sp_B9RK42_GPC1_RICCO
Pumbscaffold_310068940.1 Terpenoid BAHD low borderline BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
Pumbscaffold_3220072670.1 Terpenoid BAHD medium pass BAHD__00053__sp_Q8GXU8_LPAT1_ARATH
Pumbscaffold_5230099240.1 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Pumbscaffold_820122850.1 Terpenoid BAHD medium pass BAHD__00086__sp_Q9M306_ZDH10_ARATH
Pumbscaffold_820122980.1 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH