PlantSME Plant secondary metabolism enzyme database

Porphyra umbilicalis (porphyra_umbilicalis)

Imported from atlas release summary for Porphyra umbilicalis.

70
Candidate Genes
71
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.86% Alkaloid pathway 24.29% Phenylpropanoid pathway 15.71% Steroid pathway 12.86% Rosmarinic acid pathway 11.43% Flavonoid pathway 2.86%
Family Distribution
4CL 7.93% C4H 6.17% BAHD 6.17% C3'H/CYP98A 5.73% POD 4.85% IFR 3.96% NMT 3.52% CNMT 3.52%
Other Families 58.15%
More Families (63)
GS 8 3.52% T3O 7 3.08% CYP76 6 2.64% STR 5 2.2% CYP90D1 5 2.2% DWF4/CYP90B1 5 2.2% CYP71 5 2.2% F3'H/CYP75B 4 1.76% SLS 3 1.32% TRI/TRII 3 1.32% IFS 3 1.32% HPPR 3 1.32% CPR 3 1.32% MCT/IspD 3 1.32% SGD 2 0.88% T16H 2 0.88% G8O/G8H 2 0.88% 8HGO 2 0.88% CYP719 2 0.88% F3'5'H/CYP75A 2 0.88% FNS 2 0.88% CSE 2 0.88% CAD 2 0.88% COMT 2 0.88% CPD/CYP90A1 2 0.88% SMT1/SMT2/SMT3 2 0.88% SQS/FDFT1 2 0.88% SMO1/SMO2 2 0.88% CAS 2 0.88% DWF1 2 0.88% DXS 2 0.88% FPPS 2 0.88% HMGS 2 0.88% AACT 2 0.88% CYP80B1 1 0.44% GES 1 0.44% TYDC_DDC 1 0.44% ODC 1 0.44% COR 1 0.44% PMT 1 0.44% PYKS 1 0.44% MPO 1 0.44% 16OMT 1 0.44% BBE 1 0.44% DFR 1 0.44% UFGT 1 0.44% TAT 1 0.44% FK 1 0.44% BR6OX2/CYP85A2 1 0.44% SQE 1 0.44% CYP51G1 1 0.44% DET2 1 0.44% DWF5 1 0.44% ROT3/CYP90C1 1 0.44% DWF7 1 0.44% PMK 1 0.44% IDI 1 0.44% MVK 1 0.44% DXR 1 0.44% GGPPS 1 0.44% HDS/IspG 1 0.44% HDR/IspH 1 0.44% UGT 1 0.44%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 23 10 BAHD (8) View species results
Alkaloid pathway 17 8 GS (5) View species results
Phenylpropanoid pathway 11 2 POD (9) View species results
Steroid pathway 9 7 CAS (2) View species results
Rosmarinic acid pathway 8 4 CPR (3) View species results
Flavonoid pathway 2 1 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 19 79 BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 1 14 BAHD
Identification Result List
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Gene Pathway Family Confidence Status
Pumbscaffold_2200042680.1 Flavonoid IFR low borderline
Pumbscaffold_24260050200.1 Flavonoid IFR low borderline
Pumbscaffold_2890063410.1 Flavonoid IFR low borderline
Pumbscaffold_330074650.1 Flavonoid IFR low borderline
Pumbscaffold_5010095320.1 Flavonoid IFR low borderline
Pumbscaffold_5650103360.1 Flavonoid IFR low borderline
Pumbscaffold_5740104200.1 Flavonoid IFR low borderline
Pumbscaffold_5750104250.1 Flavonoid IFR low borderline
Pumbscaffold_820122340.1 Flavonoid IFR low borderline