PlantSME Plant secondary metabolism enzyme database

Porphyra umbilicalis (porphyra_umbilicalis)

Imported from atlas release summary for Porphyra umbilicalis.

70
Candidate Genes
71
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.86% Alkaloid pathway 24.29% Phenylpropanoid pathway 15.71% Steroid pathway 12.86% Rosmarinic acid pathway 11.43% Flavonoid pathway 2.86%
Family Distribution
4CL 7.93% C4H 6.17% BAHD 6.17% C3'H/CYP98A 5.73% POD 4.85% IFR 3.96% NMT 3.52% CNMT 3.52%
Other Families 58.15%
More Families (63)
GS 8 3.52% T3O 7 3.08% CYP76 6 2.64% STR 5 2.2% CYP90D1 5 2.2% DWF4/CYP90B1 5 2.2% CYP71 5 2.2% F3'H/CYP75B 4 1.76% SLS 3 1.32% TRI/TRII 3 1.32% IFS 3 1.32% HPPR 3 1.32% CPR 3 1.32% MCT/IspD 3 1.32% SGD 2 0.88% T16H 2 0.88% G8O/G8H 2 0.88% 8HGO 2 0.88% CYP719 2 0.88% F3'5'H/CYP75A 2 0.88% FNS 2 0.88% CSE 2 0.88% CAD 2 0.88% COMT 2 0.88% CPD/CYP90A1 2 0.88% SMT1/SMT2/SMT3 2 0.88% SQS/FDFT1 2 0.88% SMO1/SMO2 2 0.88% CAS 2 0.88% DWF1 2 0.88% DXS 2 0.88% FPPS 2 0.88% HMGS 2 0.88% AACT 2 0.88% CYP80B1 1 0.44% GES 1 0.44% TYDC_DDC 1 0.44% ODC 1 0.44% COR 1 0.44% PMT 1 0.44% PYKS 1 0.44% MPO 1 0.44% 16OMT 1 0.44% BBE 1 0.44% DFR 1 0.44% UFGT 1 0.44% TAT 1 0.44% FK 1 0.44% BR6OX2/CYP85A2 1 0.44% SQE 1 0.44% CYP51G1 1 0.44% DET2 1 0.44% DWF5 1 0.44% ROT3/CYP90C1 1 0.44% DWF7 1 0.44% PMK 1 0.44% IDI 1 0.44% MVK 1 0.44% DXR 1 0.44% GGPPS 1 0.44% HDS/IspG 1 0.44% HDR/IspH 1 0.44% UGT 1 0.44%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 23 10 BAHD (8) View species results
Alkaloid pathway 17 8 GS (5) View species results
Phenylpropanoid pathway 11 2 POD (9) View species results
Steroid pathway 9 7 CAS (2) View species results
Rosmarinic acid pathway 8 4 CPR (3) View species results
Flavonoid pathway 2 1 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 19 79 BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 1 14 BAHD
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Pumbscaffold_3570078880.1 Terpenoid AACT medium pass
Pumbscaffold_6680110820.1 Terpenoid AACT medium borderline
Pumbscaffold_1110004540.1 Terpenoid BAHD medium pass
Pumbscaffold_1180007370.1 Terpenoid BAHD low borderline
Pumbscaffold_2050036350.1 Terpenoid BAHD medium pass
Pumbscaffold_2160039860.1 Terpenoid BAHD medium pass
Pumbscaffold_2250043990.1 Terpenoid BAHD low borderline
Pumbscaffold_2330047100.1 Terpenoid BAHD medium pass
Pumbscaffold_2330047110.1 Terpenoid BAHD medium pass
Pumbscaffold_2930064560.1 Terpenoid BAHD low borderline
Pumbscaffold_2980065590.1 Terpenoid BAHD low borderline
Pumbscaffold_310068940.1 Terpenoid BAHD low borderline
Pumbscaffold_3220072670.1 Terpenoid BAHD medium pass
Pumbscaffold_5230099240.1 Terpenoid BAHD low borderline
Pumbscaffold_820122850.1 Terpenoid BAHD medium pass
Pumbscaffold_820122980.1 Terpenoid BAHD medium pass
Pumbscaffold_1030000770.1 Terpenoid CYP71 medium pass
Pumbscaffold_2310046590.1 Terpenoid CYP71 medium pass
Pumbscaffold_320072140.1 Terpenoid CYP71 medium pass
Pumbscaffold_5500102190.1 Terpenoid CYP71 medium pass
Pumbscaffold_700112860.1 Terpenoid CYP71 medium pass
Pumbscaffold_1110004420.1 Terpenoid CYP76 low borderline
Pumbscaffold_2510052460.1 Terpenoid CYP76 low borderline
Pumbscaffold_2510052460.2 Terpenoid CYP76 low borderline
Pumbscaffold_2690057820.1 Terpenoid CYP76 low borderline
Pumbscaffold_3130070120.1 Terpenoid CYP76 low borderline
Pumbscaffold_4710091490.1 Terpenoid CYP76 low borderline
Pumbscaffold_330074670.1 Terpenoid DXR high pass
Pumbscaffold_2370048270.1 Terpenoid DXS medium pass
Pumbscaffold_2370048350.1 Terpenoid DXS medium pass
Pumbscaffold_3260073350.1 Terpenoid FPPS medium pass
Pumbscaffold_760119150.1 Terpenoid FPPS medium pass
Pumbscaffold_3770081110.1 Terpenoid GGPPS medium borderline
Pumbscaffold_5820105670.1 Terpenoid HDR/IspH high pass
Pumbscaffold_4590090150.1 Terpenoid HDS/IspG low borderline
Pumbscaffold_330074140.1 Terpenoid HMGS low borderline
Pumbscaffold_3530078490.1 Terpenoid HMGS high pass
Pumbscaffold_21170038630.1 Terpenoid IDI medium pass
Pumbscaffold_4030084010.1 Terpenoid MCT/IspD low borderline
Pumbscaffold_4030084010.2 Terpenoid MCT/IspD low borderline
Pumbscaffold_980129970.1 Terpenoid MCT/IspD high pass
Pumbscaffold_28960063460.1 Terpenoid MVK low borderline
Pumbscaffold_18300030020.1 Terpenoid PMK low borderline
Pumbscaffold_870125600.1 Terpenoid UGT low borderline