Porphyra umbilicalis (porphyra_umbilicalis)
Imported from atlas release summary for Porphyra umbilicalis.
159
Candidate Protein Records
70
Pathway-Level Records
227
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
227
Family-Level Calls
4CL
7.93%
C4H
6.17%
BAHD
6.17%
C3'H/CYP98A
5.73%
POD
4.85%
IFR
3.96%
NMT
3.52%
CNMT
3.52%
Other Families
58.15%
More Families (63)
GS
8
3.52%
T3O
7
3.08%
CYP76
6
2.64%
STR
5
2.2%
CYP90D1
5
2.2%
DWF4/CYP90B1
5
2.2%
CYP71
5
2.2%
F3'H/CYP75B
4
1.76%
SLS
3
1.32%
TRI/TRII
3
1.32%
IFS
3
1.32%
HPPR
3
1.32%
CPR
3
1.32%
MCT/IspD
3
1.32%
SGD
2
0.88%
T16H
2
0.88%
G8O/G8H
2
0.88%
8HGO
2
0.88%
CYP719
2
0.88%
F3'5'H/CYP75A
2
0.88%
FNS
2
0.88%
CSE
2
0.88%
CAD
2
0.88%
COMT
2
0.88%
CPD/CYP90A1
2
0.88%
SMT1/SMT2/SMT3
2
0.88%
SQS/FDFT1
2
0.88%
SMO1/SMO2
2
0.88%
CAS
2
0.88%
DWF1
2
0.88%
DXS
2
0.88%
FPPS
2
0.88%
HMGS
2
0.88%
AACT
2
0.88%
CYP80B1
1
0.44%
GES
1
0.44%
TYDC_DDC
1
0.44%
ODC
1
0.44%
COR
1
0.44%
PMT
1
0.44%
PYKS
1
0.44%
MPO
1
0.44%
16OMT
1
0.44%
BBE
1
0.44%
DFR
1
0.44%
UFGT
1
0.44%
TAT
1
0.44%
FK
1
0.44%
BR6OX2/CYP85A2
1
0.44%
SQE
1
0.44%
CYP51G1
1
0.44%
DET2
1
0.44%
DWF5
1
0.44%
ROT3/CYP90C1
1
0.44%
DWF7
1
0.44%
PMK
1
0.44%
IDI
1
0.44%
MVK
1
0.44%
DXR
1
0.44%
GGPPS
1
0.44%
HDS/IspG
1
0.44%
HDR/IspH
1
0.44%
UGT
1
0.44%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 23 | 10 | BAHD (8) | View species results |
| Alkaloid pathway | 17 | 8 | GS (5) | View species results |
| Phenylpropanoid pathway | 11 | 2 | POD (9) | View species results |
| Steroid pathway | 9 | 7 | CAS (2) | View species results |
| Rosmarinic acid pathway | 8 | 4 | CPR (3) | View species results |
| Flavonoid pathway | 2 | 1 | 4CL (2) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 19 | 79 | BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 1 | 14 | BAHD |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pumbscaffold_3130070120.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00002__sp_B1NF18_C719B_PAPSO |
| Pumbscaffold_4000083580.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00011__sp_Q948Y1_C719A_COPJA |