PlantSME Plant secondary metabolism enzyme database

Ptychomnion cygnisetum (ptychomnion_cygnisetum)

Imported from atlas release summary for Ptychomnion cygnisetum.

596
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.17% Terpenoid pathway 23.66% Alkaloid pathway 21.64% Flavonoid pathway 13.26% Rosmarinic acid pathway 8.72% Steroid pathway 6.54%
Family Distribution
C4H 7.55% C3'H/CYP98A 6.02% BAHD 5.59% POD 5.22% 4CL 4.6% CYP76 4.3% NMT 3.74% GS 3.19%
Other Families 59.79%
More Families (96)
IFS 49 3.01% T3O 46 2.82% F3'H/CYP75B 42 2.58% BR6OX2/CYP85A2 38 2.33% DWF4/CYP90B1 37 2.27% IFR 34 2.09% STR 33 2.03% F3H 31 1.9% UGT 29 1.78% UFGT 28 1.72% 7DLGT 27 1.66% PYKS 27 1.66% CAD 26 1.6% PAL 24 1.47% TRI/TRII 23 1.41% CODM/T6ODM 23 1.41% SMT1/SMT2/SMT3 23 1.41% IO 22 1.35% CHS 22 1.35% COMT 15 0.92% CYP71 15 0.92% 7DLH 14 0.86% CSE 13 0.8% CAS 12 0.74% CYP90D1 12 0.74% HCT 11 0.68% LAC 11 0.68% NCS 10 0.61% H6H 10 0.61% G8O/G8H 9 0.55% SGD 9 0.55% SLS 9 0.55% 16OMT 9 0.55% CNMT 9 0.55% F3'5'H/CYP75A 9 0.55% 8HGO 8 0.49% RAS 8 0.49% CPD/CYP90A1 8 0.49% T16H 7 0.43% BBE 7 0.43% PMT 7 0.43% ANR 7 0.43% FNS 7 0.43% CPR 7 0.43% DFR 6 0.37% CYP51G1 6 0.37% COR 5 0.31% LAMT 5 0.31% F5H/CYP84A 5 0.31% TDC 4 0.25% CYP719 4 0.25% MPO 4 0.25% CYP80F1 4 0.25% CHI 4 0.25% CCR 4 0.25% TAT 4 0.25% BR6OX1/CYP85A1 4 0.25% DET2 4 0.25% SQS/FDFT1 4 0.25% SMO1/SMO2 4 0.25% SQE 4 0.25% DWF5 4 0.25% GGPPS 4 0.25% TYDC_DDC 3 0.18% GES 3 0.18% ANS/LDOX 3 0.18% CCoAOMT 3 0.18% HYD1 3 0.18% DWF1 3 0.18% ROT3/CYP90C1 3 0.18% AACT 3 0.18% MVK 3 0.18% 6OMT_4OMT_SOMT 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% ADC 2 0.12% HPPR 2 0.12% HDR/IspH 2 0.12% HMGR 2 0.12% MCT/IspD 2 0.12% CMK/IspE 2 0.12% FPPS 2 0.12% TPS 2 0.12% MVD 2 0.12% DXR 2 0.12% ISY 1 0.06% FLS 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% MDS/IspF 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% HMGS 1 0.06% DXS 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 156 11 POD (81) View species results
Terpenoid pathway 141 19 BAHD (61) View species results
Alkaloid pathway 129 18 NMT (25) View species results
Flavonoid pathway 79 10 UFGT (25) View species results
Rosmarinic acid pathway 52 7 C4H (23) View species results
Steroid pathway 39 13 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 636 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 110 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Pcyg1836080003370 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pcyg1841400004170 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pcyg1866040006370 Flavonoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Pcyg2118720024590 Flavonoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pcyg2118720024600 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pcyg2163470028730 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pcyg2375040048890 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pcyg2383500053010 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2509900069190 Flavonoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Pcyg2513520077020 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Pcyg2664600095450 Flavonoid 4CL medium pass 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Pcyg2717560107940 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Pcyg2742370109850 Flavonoid 4CL medium pass 4CL__00009__sp_Q67W82_4CL4_ORYSJ
Pcyg2766380111430 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pcyg2766670111730 Flavonoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Pcyg2767960114100 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Pcyg2780450127670 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2789730135650 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pcyg2833940146960 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2841910154600 Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Pcyg2895880189060 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2906030197660 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pcyg2929280212900 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pcyg2936220216010 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2973180230990 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Pcyg1836080003370 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pcyg1841400004170 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pcyg1866040006370 Phenylpropanoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Pcyg2118720024590 Phenylpropanoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Pcyg2118720024600 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pcyg2163470028730 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Pcyg2375040048890 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pcyg2383500053010 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2509900069190 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Pcyg2513520077020 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Pcyg2664600095450 Phenylpropanoid 4CL medium pass 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Pcyg2717560107940 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Pcyg2742370109850 Phenylpropanoid 4CL medium pass 4CL__00009__sp_Q67W82_4CL4_ORYSJ
Pcyg2766380111430 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Pcyg2766670111730 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Pcyg2767960114100 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Pcyg2780450127670 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2789730135650 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pcyg2833940146960 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2841910154600 Phenylpropanoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Pcyg2895880189060 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2906030197660 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Pcyg2929280212900 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Pcyg2936220216010 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Pcyg2973180230990 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ