Ptychomnion cygnisetum (ptychomnion_cygnisetum)
Imported from atlas release summary for Ptychomnion cygnisetum.
596
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
596
Candidate Genes
C4H
7.55%
C3'H/CYP98A
6.02%
BAHD
5.59%
POD
5.22%
4CL
4.6%
CYP76
4.3%
NMT
3.74%
GS
3.19%
Other Families
59.79%
More Families (96)
IFS
49
3.01%
T3O
46
2.82%
F3'H/CYP75B
42
2.58%
BR6OX2/CYP85A2
38
2.33%
DWF4/CYP90B1
37
2.27%
IFR
34
2.09%
STR
33
2.03%
F3H
31
1.9%
UGT
29
1.78%
UFGT
28
1.72%
7DLGT
27
1.66%
PYKS
27
1.66%
CAD
26
1.6%
PAL
24
1.47%
TRI/TRII
23
1.41%
CODM/T6ODM
23
1.41%
SMT1/SMT2/SMT3
23
1.41%
IO
22
1.35%
CHS
22
1.35%
COMT
15
0.92%
CYP71
15
0.92%
7DLH
14
0.86%
CSE
13
0.8%
CAS
12
0.74%
CYP90D1
12
0.74%
HCT
11
0.68%
LAC
11
0.68%
NCS
10
0.61%
H6H
10
0.61%
G8O/G8H
9
0.55%
SGD
9
0.55%
SLS
9
0.55%
16OMT
9
0.55%
CNMT
9
0.55%
F3'5'H/CYP75A
9
0.55%
8HGO
8
0.49%
RAS
8
0.49%
CPD/CYP90A1
8
0.49%
T16H
7
0.43%
BBE
7
0.43%
PMT
7
0.43%
ANR
7
0.43%
FNS
7
0.43%
CPR
7
0.43%
DFR
6
0.37%
CYP51G1
6
0.37%
COR
5
0.31%
LAMT
5
0.31%
F5H/CYP84A
5
0.31%
TDC
4
0.25%
CYP719
4
0.25%
MPO
4
0.25%
CYP80F1
4
0.25%
CHI
4
0.25%
CCR
4
0.25%
TAT
4
0.25%
BR6OX1/CYP85A1
4
0.25%
DET2
4
0.25%
SQS/FDFT1
4
0.25%
SMO1/SMO2
4
0.25%
SQE
4
0.25%
DWF5
4
0.25%
GGPPS
4
0.25%
TYDC_DDC
3
0.18%
GES
3
0.18%
ANS/LDOX
3
0.18%
CCoAOMT
3
0.18%
HYD1
3
0.18%
DWF1
3
0.18%
ROT3/CYP90C1
3
0.18%
AACT
3
0.18%
MVK
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
CYP80B1
2
0.12%
ODC
2
0.12%
ADC
2
0.12%
HPPR
2
0.12%
HDR/IspH
2
0.12%
HMGR
2
0.12%
MCT/IspD
2
0.12%
CMK/IspE
2
0.12%
FPPS
2
0.12%
TPS
2
0.12%
MVD
2
0.12%
DXR
2
0.12%
ISY
1
0.06%
FLS
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
MDS/IspF
1
0.06%
PMK
1
0.06%
HDS/IspG
1
0.06%
HMGS
1
0.06%
DXS
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 156 | 11 | POD (81) | View species results |
| Terpenoid pathway | 141 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 129 | 18 | NMT (25) | View species results |
| Flavonoid pathway | 79 | 10 | UFGT (25) | View species results |
| Rosmarinic acid pathway | 52 | 7 | C4H (23) | View species results |
| Steroid pathway | 39 | 13 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 636 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 110 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pcyg1761010000170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg1836440003440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg1865980006240 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pcyg1893870009950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg1893960010150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2155520025830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2198690038550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2386640057860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2445690062790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2510510070370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2655180087640 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2655520088110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2655600088390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2656120089140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2656120089170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2767540112500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2767670113120 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pcyg2768360114960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2769570116910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2775750125430 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pcyg2779620127140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2781760129130 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pcyg2789280133900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2846270157110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2872320176990 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pcyg2890720184420 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pcyg2905160196150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2905180196440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2910620201640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2918460204000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2925620208990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2929020212110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pcyg2962150228440 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |