PlantSME Plant secondary metabolism enzyme database

Ptychomnion cygnisetum (ptychomnion_cygnisetum)

Imported from atlas release summary for Ptychomnion cygnisetum.

596
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.17% Terpenoid pathway 23.66% Alkaloid pathway 21.64% Flavonoid pathway 13.26% Rosmarinic acid pathway 8.72% Steroid pathway 6.54%
Family Distribution
C4H 7.55% C3'H/CYP98A 6.02% BAHD 5.59% POD 5.22% 4CL 4.6% CYP76 4.3% NMT 3.74% GS 3.19%
Other Families 59.79%
More Families (96)
IFS 49 3.01% T3O 46 2.82% F3'H/CYP75B 42 2.58% BR6OX2/CYP85A2 38 2.33% DWF4/CYP90B1 37 2.27% IFR 34 2.09% STR 33 2.03% F3H 31 1.9% UGT 29 1.78% UFGT 28 1.72% 7DLGT 27 1.66% PYKS 27 1.66% CAD 26 1.6% PAL 24 1.47% TRI/TRII 23 1.41% CODM/T6ODM 23 1.41% SMT1/SMT2/SMT3 23 1.41% IO 22 1.35% CHS 22 1.35% COMT 15 0.92% CYP71 15 0.92% 7DLH 14 0.86% CSE 13 0.8% CAS 12 0.74% CYP90D1 12 0.74% HCT 11 0.68% LAC 11 0.68% NCS 10 0.61% H6H 10 0.61% G8O/G8H 9 0.55% SGD 9 0.55% SLS 9 0.55% 16OMT 9 0.55% CNMT 9 0.55% F3'5'H/CYP75A 9 0.55% 8HGO 8 0.49% RAS 8 0.49% CPD/CYP90A1 8 0.49% T16H 7 0.43% BBE 7 0.43% PMT 7 0.43% ANR 7 0.43% FNS 7 0.43% CPR 7 0.43% DFR 6 0.37% CYP51G1 6 0.37% COR 5 0.31% LAMT 5 0.31% F5H/CYP84A 5 0.31% TDC 4 0.25% CYP719 4 0.25% MPO 4 0.25% CYP80F1 4 0.25% CHI 4 0.25% CCR 4 0.25% TAT 4 0.25% BR6OX1/CYP85A1 4 0.25% DET2 4 0.25% SQS/FDFT1 4 0.25% SMO1/SMO2 4 0.25% SQE 4 0.25% DWF5 4 0.25% GGPPS 4 0.25% TYDC_DDC 3 0.18% GES 3 0.18% ANS/LDOX 3 0.18% CCoAOMT 3 0.18% HYD1 3 0.18% DWF1 3 0.18% ROT3/CYP90C1 3 0.18% AACT 3 0.18% MVK 3 0.18% 6OMT_4OMT_SOMT 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% ADC 2 0.12% HPPR 2 0.12% HDR/IspH 2 0.12% HMGR 2 0.12% MCT/IspD 2 0.12% CMK/IspE 2 0.12% FPPS 2 0.12% TPS 2 0.12% MVD 2 0.12% DXR 2 0.12% ISY 1 0.06% FLS 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% MDS/IspF 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% HMGS 1 0.06% DXS 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 156 11 POD (81) View species results
Terpenoid pathway 141 19 BAHD (61) View species results
Alkaloid pathway 129 18 NMT (25) View species results
Flavonoid pathway 79 10 UFGT (25) View species results
Rosmarinic acid pathway 52 7 C4H (23) View species results
Steroid pathway 39 13 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 636 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 110 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Pcyg1805890000840 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcyg1909930016990 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcyg2393110062030 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Pcyg2393110062080 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Pcyg2519680079400 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Pcyg2650860086190 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcyg2770330118490 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcyg2871360173870 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcyg2891650185800 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Pcyg2920780206380 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO