Quercus variabilis (quercus_variabilis)
Imported from atlas release summary for Quercus variabilis.
1561
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1561
Candidate Genes
C3'H/CYP98A
6.19%
C4H
5.96%
BAHD
4.38%
POD
4.15%
IFS
4.07%
CYP76
4.0%
UGT
3.74%
T3O
3.61%
Other Families
63.91%
More Families (94)
7DLGT
128
3.3%
UFGT
127
3.27%
F3H
123
3.17%
DWF4/CYP90B1
121
3.12%
4CL
105
2.71%
CAS
84
2.17%
NMT
82
2.11%
F3'H/CYP75B
82
2.11%
CODM/T6ODM
80
2.06%
BR6OX2/CYP85A2
73
1.88%
CAD
72
1.86%
LAC
69
1.78%
STR
59
1.52%
SGD
58
1.5%
H6H
56
1.44%
TPS
56
1.44%
CYP71
54
1.39%
GES
53
1.37%
SMT1/SMT2/SMT3
51
1.31%
TRI/TRII
50
1.29%
IFR
45
1.16%
COMT
43
1.11%
GS
39
1.01%
IO
36
0.93%
T16H
32
0.82%
CYP90D1
32
0.82%
G8O/G8H
28
0.72%
LAMT
27
0.7%
F5H/CYP84A
26
0.67%
NCS
25
0.64%
FNS
25
0.64%
SLS
24
0.62%
CSE
23
0.59%
16OMT
22
0.57%
PYKS
21
0.54%
HCT
21
0.54%
ANR
20
0.52%
TAT
20
0.52%
COR
19
0.49%
MPO
18
0.46%
CCR
18
0.46%
BR6OX1/CYP85A1
17
0.44%
PMT
16
0.41%
CYP51G1
16
0.41%
F3'5'H/CYP75A
15
0.39%
PAL
15
0.39%
CNMT
14
0.36%
RAS
14
0.36%
7DLH
13
0.34%
ANS/LDOX
13
0.34%
CCoAOMT
13
0.34%
DFR
11
0.28%
CPD/CYP90A1
11
0.28%
8HGO
10
0.26%
HPPR
10
0.26%
ISY
9
0.23%
XMT_MXMT_DXMT
8
0.21%
SQS/FDFT1
8
0.21%
CYP719
7
0.18%
CPR
7
0.18%
SQE
7
0.18%
CHS
6
0.15%
ROT3/CYP90C1
6
0.15%
DXS
6
0.15%
GGPPS
6
0.15%
HDR/IspH
6
0.15%
CYP80B1
5
0.13%
FPPS
5
0.13%
AACT
5
0.13%
DET2
4
0.1%
HMGS
4
0.1%
MVD
4
0.1%
BBE
3
0.08%
CHI
3
0.08%
DWF7
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
MCT/IspD
3
0.08%
6OMT_4OMT_SOMT
2
0.05%
TDC
2
0.05%
CYP80F1
2
0.05%
SMO1/SMO2
2
0.05%
DWF5
2
0.05%
CMK/IspE
2
0.05%
IDI
2
0.05%
TYDC_DDC
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 403 | 19 | BAHD (135) | View species results |
| Alkaloid pathway | 364 | 19 | 7DLGT (64) | View species results |
| Phenylpropanoid pathway | 355 | 12 | POD (147) | View species results |
| Flavonoid pathway | 190 | 14 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 127 | 7 | C4H (64) | View species results |
| Steroid pathway | 122 | 10 | CAS (72) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1524 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| quercus_variabilis_Quercus_variabilis00003427.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00010638.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00011237.1 | Alkaloid | PYKS | medium | pass |
| quercus_variabilis_Quercus_variabilis00011597.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00012054.1 | Alkaloid | PYKS | high | pass |
| quercus_variabilis_Quercus_variabilis00013003.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00013912.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00013960.1 | Alkaloid | PYKS | high | pass |
| quercus_variabilis_Quercus_variabilis00017775.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00020627.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00022551.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00026641.1 | Alkaloid | PYKS | medium | pass |
| quercus_variabilis_Quercus_variabilis00028739.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00037448.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00037450.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00037451.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00049548.1 | Alkaloid | PYKS | high | pass |
| quercus_variabilis_Quercus_variabilis00052852.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00053595.1 | Alkaloid | PYKS | high | pass |
| quercus_variabilis_Quercus_variabilis00056987.1 | Alkaloid | PYKS | low | borderline |
| quercus_variabilis_Quercus_variabilis00057176.1 | Alkaloid | PYKS | low | borderline |