PlantSME Plant secondary metabolism enzyme database

Quercus variabilis (quercus_variabilis)

Imported from atlas release summary for Quercus variabilis.

1561
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.82% Alkaloid pathway 23.32% Phenylpropanoid pathway 22.74% Flavonoid pathway 12.17% Rosmarinic acid pathway 8.14% Steroid pathway 7.82%
Family Distribution
C3'H/CYP98A 6.19% C4H 5.96% BAHD 4.38% POD 4.15% IFS 4.07% CYP76 4.0% UGT 3.74% T3O 3.61%
Other Families 63.91%
More Families (94)
7DLGT 128 3.3% UFGT 127 3.27% F3H 123 3.17% DWF4/CYP90B1 121 3.12% 4CL 105 2.71% CAS 84 2.17% NMT 82 2.11% F3'H/CYP75B 82 2.11% CODM/T6ODM 80 2.06% BR6OX2/CYP85A2 73 1.88% CAD 72 1.86% LAC 69 1.78% STR 59 1.52% SGD 58 1.5% H6H 56 1.44% TPS 56 1.44% CYP71 54 1.39% GES 53 1.37% SMT1/SMT2/SMT3 51 1.31% TRI/TRII 50 1.29% IFR 45 1.16% COMT 43 1.11% GS 39 1.01% IO 36 0.93% T16H 32 0.82% CYP90D1 32 0.82% G8O/G8H 28 0.72% LAMT 27 0.7% F5H/CYP84A 26 0.67% NCS 25 0.64% FNS 25 0.64% SLS 24 0.62% CSE 23 0.59% 16OMT 22 0.57% PYKS 21 0.54% HCT 21 0.54% ANR 20 0.52% TAT 20 0.52% COR 19 0.49% MPO 18 0.46% CCR 18 0.46% BR6OX1/CYP85A1 17 0.44% PMT 16 0.41% CYP51G1 16 0.41% F3'5'H/CYP75A 15 0.39% PAL 15 0.39% CNMT 14 0.36% RAS 14 0.36% 7DLH 13 0.34% ANS/LDOX 13 0.34% CCoAOMT 13 0.34% DFR 11 0.28% CPD/CYP90A1 11 0.28% 8HGO 10 0.26% HPPR 10 0.26% ISY 9 0.23% XMT_MXMT_DXMT 8 0.21% SQS/FDFT1 8 0.21% CYP719 7 0.18% CPR 7 0.18% SQE 7 0.18% CHS 6 0.15% ROT3/CYP90C1 6 0.15% DXS 6 0.15% GGPPS 6 0.15% HDR/IspH 6 0.15% CYP80B1 5 0.13% FPPS 5 0.13% AACT 5 0.13% DET2 4 0.1% HMGS 4 0.1% MVD 4 0.1% BBE 3 0.08% CHI 3 0.08% DWF7 3 0.08% MVK 3 0.08% HMGR 3 0.08% MCT/IspD 3 0.08% 6OMT_4OMT_SOMT 2 0.05% TDC 2 0.05% CYP80F1 2 0.05% SMO1/SMO2 2 0.05% DWF5 2 0.05% CMK/IspE 2 0.05% IDI 2 0.05% TYDC_DDC 1 0.03% FK 1 0.03% CPI1 1 0.03% DWF1 1 0.03% HYD1 1 0.03% PMK 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 403 19 BAHD (135) View species results
Alkaloid pathway 364 19 7DLGT (64) View species results
Phenylpropanoid pathway 355 12 POD (147) View species results
Flavonoid pathway 190 14 UFGT (116) View species results
Rosmarinic acid pathway 127 7 C4H (64) View species results
Steroid pathway 122 10 CAS (72) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1524 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 205 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
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Gene Pathway Family Confidence Status Best Target
quercus_variabilis_Quercus_variabilis00012453.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
quercus_variabilis_Quercus_variabilis00012454.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
quercus_variabilis_Quercus_variabilis00012455.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
quercus_variabilis_Quercus_variabilis00015956.1 Steroid SQE low borderline SQE__00005__sp_Q9SM02_ERG14_ARATH
quercus_variabilis_Quercus_variabilis00015957.1 Steroid SQE medium pass SQE__00004__sp_Q8VYH2_ERG16_ARATH
quercus_variabilis_Quercus_variabilis00015958.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
quercus_variabilis_Quercus_variabilis00028085.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI