Quercus variabilis (quercus_variabilis)
Imported from atlas release summary for Quercus variabilis.
1888
Candidate Protein Records
1561
Pathway-Level Records
3879
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3879
Family-Level Calls
C3'H/CYP98A
6.19%
C4H
5.96%
BAHD
4.38%
POD
4.15%
IFS
4.07%
CYP76
4.0%
UGT
3.74%
T3O
3.61%
Other Families
63.91%
More Families (94)
7DLGT
128
3.3%
UFGT
127
3.27%
F3H
123
3.17%
DWF4/CYP90B1
121
3.12%
4CL
105
2.71%
CAS
84
2.17%
NMT
82
2.11%
F3'H/CYP75B
82
2.11%
CODM/T6ODM
80
2.06%
BR6OX2/CYP85A2
73
1.88%
CAD
72
1.86%
LAC
69
1.78%
STR
59
1.52%
SGD
58
1.5%
H6H
56
1.44%
TPS
56
1.44%
CYP71
54
1.39%
GES
53
1.37%
SMT1/SMT2/SMT3
51
1.31%
TRI/TRII
50
1.29%
IFR
45
1.16%
COMT
43
1.11%
GS
39
1.01%
IO
36
0.93%
T16H
32
0.82%
CYP90D1
32
0.82%
G8O/G8H
28
0.72%
LAMT
27
0.7%
F5H/CYP84A
26
0.67%
NCS
25
0.64%
FNS
25
0.64%
SLS
24
0.62%
CSE
23
0.59%
16OMT
22
0.57%
PYKS
21
0.54%
HCT
21
0.54%
ANR
20
0.52%
TAT
20
0.52%
COR
19
0.49%
MPO
18
0.46%
CCR
18
0.46%
BR6OX1/CYP85A1
17
0.44%
PMT
16
0.41%
CYP51G1
16
0.41%
F3'5'H/CYP75A
15
0.39%
PAL
15
0.39%
CNMT
14
0.36%
RAS
14
0.36%
7DLH
13
0.34%
ANS/LDOX
13
0.34%
CCoAOMT
13
0.34%
DFR
11
0.28%
CPD/CYP90A1
11
0.28%
8HGO
10
0.26%
HPPR
10
0.26%
ISY
9
0.23%
XMT_MXMT_DXMT
8
0.21%
SQS/FDFT1
8
0.21%
CYP719
7
0.18%
CPR
7
0.18%
SQE
7
0.18%
CHS
6
0.15%
ROT3/CYP90C1
6
0.15%
DXS
6
0.15%
GGPPS
6
0.15%
HDR/IspH
6
0.15%
CYP80B1
5
0.13%
FPPS
5
0.13%
AACT
5
0.13%
DET2
4
0.1%
HMGS
4
0.1%
MVD
4
0.1%
BBE
3
0.08%
CHI
3
0.08%
DWF7
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
MCT/IspD
3
0.08%
6OMT_4OMT_SOMT
2
0.05%
TDC
2
0.05%
CYP80F1
2
0.05%
SMO1/SMO2
2
0.05%
DWF5
2
0.05%
CMK/IspE
2
0.05%
IDI
2
0.05%
TYDC_DDC
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 403 | 19 | BAHD (135) | View species results |
| Alkaloid pathway | 364 | 19 | 7DLGT (64) | View species results |
| Phenylpropanoid pathway | 355 | 12 | POD (147) | View species results |
| Flavonoid pathway | 190 | 14 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 127 | 7 | C4H (64) | View species results |
| Steroid pathway | 122 | 10 | CAS (72) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1524 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| quercus_variabilis_Quercus_variabilis00040372.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00040375.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00040377.1 | Alkaloid | SGD | low | borderline |
| quercus_variabilis_Quercus_variabilis00040378.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00040379.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00040380.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00041536.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00041542.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00047871.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00047872.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00048652.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051935.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051936.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051942.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051953.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051954.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051961.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051964.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051966.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051967.1 | Alkaloid | SGD | low | borderline |
| quercus_variabilis_Quercus_variabilis00051968.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051970.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00051971.1 | Alkaloid | SGD | medium | pass |
| quercus_variabilis_Quercus_variabilis00005550.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00008183.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00020809.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00021638.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00027737.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00027738.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00028361.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00028370.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00029772.1 | Alkaloid | SLS | medium | pass |
| quercus_variabilis_Quercus_variabilis00035517.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00036396.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00041151.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00042001.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00046097.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00046442.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00046742.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00048778.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00048796.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00050143.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00050208.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00050210.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00052842.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00055078.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00057581.1 | Alkaloid | SLS | medium | borderline |
| quercus_variabilis_Quercus_variabilis00002714.1 | Alkaloid | STR | low | borderline |
| quercus_variabilis_Quercus_variabilis00005277.1 | Alkaloid | STR | low | borderline |
| quercus_variabilis_Quercus_variabilis00005282.1 | Alkaloid | STR | low | borderline |