Rubus occidentalis (rubus_occidentalis)
Imported from atlas release summary for Rubus occidentalis.
1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1347
Candidate Genes
C4H
6.78%
C3'H/CYP98A
6.1%
BAHD
4.89%
UGT
4.31%
7DLGT
3.85%
UFGT
3.85%
IFS
3.76%
4CL
3.63%
Other Families
62.84%
More Families (97)
CYP76
130
3.57%
T3O
115
3.16%
POD
104
2.86%
F3H
96
2.64%
F3'H/CYP75B
83
2.28%
DWF4/CYP90B1
82
2.25%
NMT
73
2.0%
CAD
65
1.79%
BR6OX2/CYP85A2
65
1.79%
H6H
63
1.73%
STR
63
1.73%
CODM/T6ODM
58
1.59%
LAC
58
1.59%
CYP71
54
1.48%
CAS
53
1.46%
CYP90D1
50
1.37%
GES
49
1.35%
SMT1/SMT2/SMT3
49
1.35%
TPS
49
1.35%
HCT
44
1.21%
TRI/TRII
37
1.02%
CSE
37
1.02%
GS
34
0.93%
7DLH
33
0.91%
RAS
33
0.91%
PMT
31
0.85%
IO
29
0.8%
G8O/G8H
28
0.77%
SGD
27
0.74%
SLS
26
0.71%
F5H/CYP84A
26
0.71%
T16H
25
0.69%
IFR
25
0.69%
COMT
24
0.66%
F3'5'H/CYP75A
22
0.6%
TAT
22
0.6%
PYKS
20
0.55%
BR6OX1/CYP85A1
20
0.55%
BBE
19
0.52%
CCR
19
0.52%
LAMT
18
0.49%
DFR
18
0.49%
FNS
17
0.47%
ANS/LDOX
16
0.44%
CPD/CYP90A1
15
0.41%
ANR
14
0.38%
NCS
12
0.33%
16OMT
12
0.33%
CYP51G1
12
0.33%
COR
11
0.3%
CYP80B1
10
0.27%
8HGO
10
0.27%
ROT3/CYP90C1
10
0.27%
CNMT
9
0.25%
CCoAOMT
9
0.25%
FPPS
9
0.25%
CYP719
8
0.22%
HPPR
8
0.22%
HMGR
8
0.22%
SQE
7
0.19%
MPO
6
0.16%
PAL
6
0.16%
SMO1/SMO2
6
0.16%
GGPPS
6
0.16%
MVK
6
0.16%
MVD
6
0.16%
ISY
5
0.14%
CHS
5
0.14%
CPR
5
0.14%
SQS/FDFT1
5
0.14%
AACT
5
0.14%
DXS
5
0.14%
CYP80F1
4
0.11%
TYDC_DDC
4
0.11%
DET2
4
0.11%
HMGS
4
0.11%
ODC
3
0.08%
FLS
3
0.08%
DWF7
3
0.08%
6OMT_4OMT_SOMT
2
0.05%
CHI
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 379 | 19 | BAHD (135) | View species results |
| Alkaloid pathway | 309 | 24 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 267 | 11 | POD (87) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (127) | View species results |
| Rosmarinic acid pathway | 118 | 7 | C4H (52) | View species results |
| Steroid pathway | 93 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 255 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rocc06G0031210.1 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| Rocc06G0031390.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Rocc06G0035080.1 | Terpenoid | BAHD | medium | pass | BAHD__00037__sp_Q3EBC2_ZDHC5_ARATH |
| Rocc06G0036830.1 | Terpenoid | BAHD | medium | pass | BAHD__00097__sp_Q9ZV87_NAPES_ARATH |
| Rocc06G0041560.1 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| Rocc06G0041630.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Rocc06G0042980.1 | Terpenoid | BAHD | medium | pass | BAHD__00063__sp_Q93VV0_ZDHC6_ARATH |
| Rocc06G0052600.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Rocc06G0053190.1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Rocc06G0053880.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Rocc06G0056500.1 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Rocc06G0059920.1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Rocc07G0000720.1 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Rocc07G0001460.1 | Terpenoid | BAHD | medium | pass | BAHD__00048__sp_Q5M757_ZDH15_ARATH |
| Rocc07G0004430.1 | Terpenoid | BAHD | medium | pass | BAHD__00083__sp_Q9LMM0_GPAT4_ARATH |
| Rocc07G0006420.1 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| Rocc07G0007280.1 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Rocc07G0019340.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Rocc07G0029610.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Rocc07G0031160.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Rocc07G0031250.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Rocc07G0031520.1 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Rocc07G0032390.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Rocc07G0034890.1 | Terpenoid | BAHD | medium | pass | BAHD__00071__sp_Q9CAY3_GPAT5_ARATH |
| Rocc07G0036000.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Rocc07G0036710.1 | Terpenoid | BAHD | medium | pass | BAHD__00031__sp_P0DO25_AT9_ACTDE |
| Rocc07G0040470.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Rocc07G0041860.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |