PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Rocc01G0003550.1 Flavonoid F3H medium borderline
Rocc01G0005060.1 Flavonoid F3H low borderline
Rocc01G0005900.1 Flavonoid F3H medium borderline
Rocc01G0006460.1 Flavonoid F3H medium borderline
Rocc01G0008200.1 Flavonoid F3H low borderline
Rocc01G0009890.1 Flavonoid F3H medium borderline
Rocc01G0014240.1 Flavonoid F3H low borderline
Rocc01G0021540.1 Flavonoid F3H medium pass
Rocc02G0005910.1 Flavonoid F3H medium borderline
Rocc02G0010220.1 Flavonoid F3H low borderline
Rocc02G0010250.1 Flavonoid F3H low borderline
Rocc02G0012090.1 Flavonoid F3H medium borderline
Rocc02G0012970.1 Flavonoid F3H medium borderline
Rocc02G0012990.1 Flavonoid F3H medium borderline
Rocc02G0017440.1 Flavonoid F3H medium borderline
Rocc02G0017450.1 Flavonoid F3H medium borderline
Rocc02G0017480.1 Flavonoid F3H medium borderline
Rocc02G0017490.1 Flavonoid F3H low borderline
Rocc02G0017580.1 Flavonoid F3H medium borderline
Rocc02G0017600.1 Flavonoid F3H low borderline
Rocc02G0017750.1 Flavonoid F3H medium borderline
Rocc02G0025280.1 Flavonoid F3H medium borderline
Rocc02G0025290.1 Flavonoid F3H medium borderline
Rocc02G0028650.1 Flavonoid F3H low borderline
Rocc02G0031040.1 Flavonoid F3H medium borderline
Rocc02G0032500.1 Flavonoid F3H medium borderline
Rocc02G0032590.1 Flavonoid F3H medium borderline
Rocc02G0032640.1 Flavonoid F3H medium borderline
Rocc02G0032740.1 Flavonoid F3H medium borderline
Rocc02G0033500.1 Flavonoid F3H medium borderline
Rocc02G0045160.1 Flavonoid F3H medium borderline
Rocc02G0045250.1 Flavonoid F3H medium borderline
Rocc02G0045410.1 Flavonoid F3H medium borderline
Rocc02G0046250.1 Flavonoid F3H medium borderline
Rocc02G0047610.1 Flavonoid F3H medium borderline
Rocc03G0000580.1 Flavonoid F3H medium borderline
Rocc03G0006270.1 Flavonoid F3H low borderline
Rocc03G0009770.1 Flavonoid F3H low borderline
Rocc03G0012500.1 Flavonoid F3H medium pass
Rocc03G0022860.1 Flavonoid F3H low borderline
Rocc03G0028040.1 Flavonoid F3H medium borderline
Rocc03G0033810.1 Flavonoid F3H medium borderline
Rocc03G0034430.1 Flavonoid F3H medium pass
Rocc03G0035620.1 Flavonoid F3H medium borderline
Rocc03G0042600.1 Flavonoid F3H medium borderline
Rocc03G0042610.1 Flavonoid F3H medium borderline
Rocc03G0047270.1 Flavonoid F3H medium borderline
Rocc03G0048840.1 Flavonoid F3H medium borderline
Rocc03G0049440.1 Flavonoid F3H low borderline
Rocc04G0000940.1 Flavonoid F3H medium borderline