PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rocc01G0008830.1 Rosmarinic Acid 4CL medium pass
Rocc01G0008850.1 Rosmarinic Acid 4CL medium pass
Rocc01G0009440.1 Rosmarinic Acid 4CL low borderline
Rocc01G0021670.1 Rosmarinic Acid 4CL low borderline
Rocc01G0022120.1 Rosmarinic Acid 4CL medium pass
Rocc01G0022170.1 Rosmarinic Acid 4CL medium pass
Rocc01G0022240.1 Rosmarinic Acid 4CL medium pass
Rocc01G0022970.1 Rosmarinic Acid 4CL low borderline
Rocc01G0022980.1 Rosmarinic Acid 4CL medium pass
Rocc02G0003750.1 Rosmarinic Acid 4CL medium pass
Rocc02G0011880.1 Rosmarinic Acid 4CL medium pass
Rocc02G0012640.1 Rosmarinic Acid 4CL low borderline
Rocc02G0027890.1 Rosmarinic Acid 4CL medium pass
Rocc02G0040340.1 Rosmarinic Acid 4CL low borderline
Rocc02G0040420.1 Rosmarinic Acid 4CL low borderline
Rocc02G0040470.1 Rosmarinic Acid 4CL low borderline
Rocc02G0040550.1 Rosmarinic Acid 4CL low borderline
Rocc02G0040630.1 Rosmarinic Acid 4CL low borderline
Rocc02G0040660.1 Rosmarinic Acid 4CL low borderline
Rocc02G0040760.1 Rosmarinic Acid 4CL low borderline
Rocc03G0034630.1 Rosmarinic Acid 4CL low borderline
Rocc04G0011080.1 Rosmarinic Acid 4CL medium pass
Rocc04G0011710.1 Rosmarinic Acid 4CL medium pass
Rocc04G0015510.1 Rosmarinic Acid 4CL medium pass
Rocc04G0019360.1 Rosmarinic Acid 4CL low borderline
Rocc04G0022480.1 Rosmarinic Acid 4CL low borderline
Rocc04G0042330.1 Rosmarinic Acid 4CL medium pass
Rocc05G0009290.1 Rosmarinic Acid 4CL medium pass
Rocc05G0012320.1 Rosmarinic Acid 4CL low borderline
Rocc05G0014610.1 Rosmarinic Acid 4CL medium pass
Rocc05G0022600.1 Rosmarinic Acid 4CL medium pass
Rocc06G0004700.1 Rosmarinic Acid 4CL low borderline
Rocc06G0009520.1 Rosmarinic Acid 4CL medium pass
Rocc06G0015030.1 Rosmarinic Acid 4CL low borderline
Rocc06G0024220.1 Rosmarinic Acid 4CL low borderline
Rocc06G0024240.1 Rosmarinic Acid 4CL low borderline
Rocc06G0036240.1 Rosmarinic Acid 4CL low borderline
Rocc06G0052010.1 Rosmarinic Acid 4CL medium pass
Rocc06G0053970.1 Rosmarinic Acid 4CL medium pass
Rocc06G0054040.1 Rosmarinic Acid 4CL medium pass
Rocc07G0015840.1 Rosmarinic Acid 4CL low borderline
Rocc07G0015850.1 Rosmarinic Acid 4CL low borderline
Rocc07G0017720.1 Rosmarinic Acid 4CL medium pass
Rocc07G0045290.1 Rosmarinic Acid 4CL medium pass
Rocc01G0003290.1 Rosmarinic Acid C4H low borderline
Rocc01G0007110.1 Rosmarinic Acid C4H low borderline
Rocc01G0007390.1 Rosmarinic Acid C4H low borderline
Rocc01G0010220.1 Rosmarinic Acid C4H medium pass
Rocc01G0010310.1 Rosmarinic Acid C4H low borderline
Rocc01G0010920.1 Rosmarinic Acid C4H low borderline