PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
Rocc01G0011230.1 Phenylpropanoid LAC medium pass
Rocc01G0012810.1 Phenylpropanoid LAC low borderline
Rocc01G0017690.1 Phenylpropanoid LAC medium pass
Rocc01G0019330.1 Phenylpropanoid LAC medium pass
Rocc02G0001180.1 Phenylpropanoid LAC medium pass
Rocc02G0024270.1 Phenylpropanoid LAC low borderline
Rocc02G0029690.1 Phenylpropanoid LAC medium pass
Rocc02G0029700.1 Phenylpropanoid LAC medium pass
Rocc02G0029710.1 Phenylpropanoid LAC medium pass
Rocc02G0030150.1 Phenylpropanoid LAC medium pass
Rocc02G0030180.1 Phenylpropanoid LAC medium pass
Rocc02G0030200.1 Phenylpropanoid LAC medium pass
Rocc02G0030230.1 Phenylpropanoid LAC medium pass
Rocc02G0030250.1 Phenylpropanoid LAC low borderline
Rocc02G0030270.1 Phenylpropanoid LAC medium pass
Rocc02G0038610.1 Phenylpropanoid LAC medium pass
Rocc02G0038630.1 Phenylpropanoid LAC medium pass
Rocc03G0005270.1 Phenylpropanoid LAC medium pass
Rocc03G0006930.1 Phenylpropanoid LAC medium pass
Rocc03G0008070.1 Phenylpropanoid LAC medium pass
Rocc03G0010400.1 Phenylpropanoid LAC medium pass
Rocc03G0010410.1 Phenylpropanoid LAC medium pass
Rocc03G0010730.1 Phenylpropanoid LAC medium pass
Rocc03G0015030.1 Phenylpropanoid LAC medium pass
Rocc03G0015040.1 Phenylpropanoid LAC medium pass
Rocc03G0019140.1 Phenylpropanoid LAC medium pass
Rocc03G0036480.1 Phenylpropanoid LAC medium pass
Rocc03G0038210.1 Phenylpropanoid LAC low borderline
Rocc04G0012670.1 Phenylpropanoid LAC medium pass
Rocc04G0034620.1 Phenylpropanoid LAC medium pass
Rocc04G0034650.1 Phenylpropanoid LAC low borderline
Rocc05G0001310.1 Phenylpropanoid LAC medium pass
Rocc05G0036160.1 Phenylpropanoid LAC medium pass
Rocc05G0042690.1 Phenylpropanoid LAC medium pass
Rocc05G0042710.1 Phenylpropanoid LAC medium pass
Rocc05G0042740.1 Phenylpropanoid LAC medium pass
Rocc05G0042870.1 Phenylpropanoid LAC medium pass
Rocc06G0026250.1 Phenylpropanoid LAC low borderline
Rocc06G0035920.1 Phenylpropanoid LAC medium pass
Rocc06G0041660.1 Phenylpropanoid LAC medium pass
Rocc06G0042050.1 Phenylpropanoid LAC medium pass
Rocc06G0042970.1 Phenylpropanoid LAC medium pass
Rocc06G0043000.1 Phenylpropanoid LAC medium pass
Rocc06G0048890.1 Phenylpropanoid LAC medium pass
Rocc06G0050670.1 Phenylpropanoid LAC low borderline
Rocc06G0050680.1 Phenylpropanoid LAC low borderline
Rocc07G0000320.1 Phenylpropanoid LAC medium pass
Rocc07G0000330.1 Phenylpropanoid LAC medium pass
Rocc07G0000670.1 Phenylpropanoid LAC low borderline
Rocc07G0001800.1 Phenylpropanoid LAC medium pass