PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status
Rocc01G0007390.1 Terpenoid CYP76 low borderline
Rocc01G0010220.1 Terpenoid CYP76 medium borderline
Rocc01G0014580.1 Terpenoid CYP76 medium borderline
Rocc01G0014610.1 Terpenoid CYP76 medium pass
Rocc01G0015190.1 Terpenoid CYP76 medium pass
Rocc01G0017400.1 Terpenoid CYP76 medium borderline
Rocc01G0017420.1 Terpenoid CYP76 medium borderline
Rocc01G0019760.1 Terpenoid CYP76 medium borderline
Rocc01G0021620.1 Terpenoid CYP76 medium pass
Rocc01G0021790.1 Terpenoid CYP76 low borderline
Rocc01G0027830.1 Terpenoid CYP76 medium borderline
Rocc01G0030980.1 Terpenoid CYP76 medium pass
Rocc01G0030990.1 Terpenoid CYP76 low borderline
Rocc01G0031050.1 Terpenoid CYP76 low borderline
Rocc01G0031070.1 Terpenoid CYP76 low borderline
Rocc01G0031090.1 Terpenoid CYP76 medium pass
Rocc01G0036240.1 Terpenoid CYP76 medium borderline
Rocc02G0000870.1 Terpenoid CYP76 medium borderline
Rocc02G0000910.1 Terpenoid CYP76 medium borderline
Rocc02G0001950.1 Terpenoid CYP76 low borderline
Rocc02G0007040.1 Terpenoid CYP76 low borderline
Rocc02G0007100.1 Terpenoid CYP76 medium pass
Rocc02G0007110.1 Terpenoid CYP76 medium borderline
Rocc02G0008710.1 Terpenoid CYP76 low borderline
Rocc02G0021200.1 Terpenoid CYP76 low borderline
Rocc02G0021230.1 Terpenoid CYP76 medium pass
Rocc02G0036420.1 Terpenoid CYP76 medium borderline
Rocc02G0040940.1 Terpenoid CYP76 low borderline
Rocc03G0004510.1 Terpenoid CYP76 medium pass
Rocc03G0004600.1 Terpenoid CYP76 low borderline
Rocc03G0005120.1 Terpenoid CYP76 low borderline
Rocc03G0005140.1 Terpenoid CYP76 low borderline
Rocc03G0009920.1 Terpenoid CYP76 medium borderline
Rocc03G0012170.1 Terpenoid CYP76 medium pass
Rocc03G0012180.1 Terpenoid CYP76 low borderline
Rocc03G0012190.1 Terpenoid CYP76 medium pass
Rocc03G0012200.1 Terpenoid CYP76 medium borderline
Rocc03G0013330.1 Terpenoid CYP76 medium borderline
Rocc03G0014730.1 Terpenoid CYP76 medium borderline
Rocc03G0024270.1 Terpenoid CYP76 low borderline
Rocc03G0024850.1 Terpenoid CYP76 medium borderline
Rocc03G0027490.1 Terpenoid CYP76 medium borderline
Rocc03G0029340.1 Terpenoid CYP76 medium borderline
Rocc03G0029770.1 Terpenoid CYP76 medium borderline
Rocc03G0033830.1 Terpenoid CYP76 low borderline
Rocc03G0041420.1 Terpenoid CYP76 medium borderline
Rocc04G0006540.1 Terpenoid CYP76 low borderline
Rocc04G0006820.1 Terpenoid CYP76 low borderline
Rocc04G0007920.1 Terpenoid CYP76 medium borderline
Rocc04G0010660.1 Terpenoid CYP76 medium borderline