PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
Rocc01G0007370.1 Phenylpropanoid CSE medium pass
Rocc01G0014300.1 Phenylpropanoid CSE medium pass
Rocc02G0002230.1 Phenylpropanoid CSE low borderline
Rocc02G0002330.1 Phenylpropanoid CSE medium pass
Rocc02G0006750.1 Phenylpropanoid CSE medium pass
Rocc02G0013710.1 Phenylpropanoid CSE medium pass
Rocc02G0022930.1 Phenylpropanoid CSE medium pass
Rocc02G0037200.1 Phenylpropanoid CSE medium pass
Rocc02G0043290.1 Phenylpropanoid CSE medium pass
Rocc03G0022160.1 Phenylpropanoid CSE medium pass
Rocc03G0043550.1 Phenylpropanoid CSE medium pass
Rocc03G0043650.1 Phenylpropanoid CSE medium pass
Rocc03G0043840.1 Phenylpropanoid CSE medium pass
Rocc03G0043860.1 Phenylpropanoid CSE medium pass
Rocc03G0043880.1 Phenylpropanoid CSE medium pass
Rocc03G0043890.1 Phenylpropanoid CSE medium pass
Rocc03G0045660.1 Phenylpropanoid CSE medium pass
Rocc04G0008430.1 Phenylpropanoid CSE medium pass
Rocc04G0008440.1 Phenylpropanoid CSE medium pass
Rocc04G0010280.1 Phenylpropanoid CSE medium pass
Rocc04G0024780.1 Phenylpropanoid CSE low borderline
Rocc05G0009940.1 Phenylpropanoid CSE medium pass
Rocc05G0015090.1 Phenylpropanoid CSE medium pass
Rocc05G0032770.1 Phenylpropanoid CSE medium pass
Rocc05G0033550.1 Phenylpropanoid CSE medium pass
Rocc06G0007240.1 Phenylpropanoid CSE medium pass
Rocc06G0007720.1 Phenylpropanoid CSE medium pass
Rocc06G0007760.1 Phenylpropanoid CSE medium pass
Rocc06G0007910.1 Phenylpropanoid CSE medium pass
Rocc06G0010470.1 Phenylpropanoid CSE medium pass
Rocc06G0013320.1 Phenylpropanoid CSE medium pass
Rocc06G0017220.1 Phenylpropanoid CSE medium pass
Rocc06G0017260.1 Phenylpropanoid CSE medium pass
Rocc06G0038680.1 Phenylpropanoid CSE low borderline
Rocc07G0005740.1 Phenylpropanoid CSE medium pass
Rocc07G0006030.1 Phenylpropanoid CSE medium pass
Rocc07G0012590.1 Phenylpropanoid CSE medium pass