PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Rocc01G0011570.1 Rosmarinic Acid C4H low borderline
Rocc01G0013680.1 Rosmarinic Acid C4H low borderline
Rocc01G0014580.1 Rosmarinic Acid C4H medium pass
Rocc01G0014610.1 Rosmarinic Acid C4H medium pass
Rocc01G0015190.1 Rosmarinic Acid C4H low borderline
Rocc01G0017400.1 Rosmarinic Acid C4H medium pass
Rocc01G0017420.1 Rosmarinic Acid C4H medium pass
Rocc01G0019760.1 Rosmarinic Acid C4H medium pass
Rocc01G0021620.1 Rosmarinic Acid C4H low borderline
Rocc01G0025880.1 Rosmarinic Acid C4H low borderline
Rocc01G0026570.1 Rosmarinic Acid C4H low borderline
Rocc01G0027830.1 Rosmarinic Acid C4H medium pass
Rocc01G0028180.1 Rosmarinic Acid C4H low borderline
Rocc01G0030980.1 Rosmarinic Acid C4H low borderline
Rocc01G0030990.1 Rosmarinic Acid C4H low borderline
Rocc01G0031050.1 Rosmarinic Acid C4H low borderline
Rocc01G0031070.1 Rosmarinic Acid C4H low borderline
Rocc01G0031090.1 Rosmarinic Acid C4H low borderline
Rocc01G0036240.1 Rosmarinic Acid C4H medium pass
Rocc02G0000830.1 Rosmarinic Acid C4H low borderline
Rocc02G0000870.1 Rosmarinic Acid C4H low borderline
Rocc02G0000910.1 Rosmarinic Acid C4H medium pass
Rocc02G0001340.1 Rosmarinic Acid C4H low borderline
Rocc02G0001950.1 Rosmarinic Acid C4H low borderline
Rocc02G0006360.1 Rosmarinic Acid C4H low borderline
Rocc02G0007040.1 Rosmarinic Acid C4H low borderline
Rocc02G0007100.1 Rosmarinic Acid C4H medium pass
Rocc02G0007110.1 Rosmarinic Acid C4H medium pass
Rocc02G0008710.1 Rosmarinic Acid C4H low borderline
Rocc02G0009270.1 Rosmarinic Acid C4H low borderline
Rocc02G0020110.1 Rosmarinic Acid C4H low borderline
Rocc02G0021200.1 Rosmarinic Acid C4H low borderline
Rocc02G0021230.1 Rosmarinic Acid C4H low borderline
Rocc02G0023800.1 Rosmarinic Acid C4H low borderline
Rocc02G0023970.1 Rosmarinic Acid C4H low borderline
Rocc02G0026380.1 Rosmarinic Acid C4H low borderline
Rocc02G0027030.1 Rosmarinic Acid C4H low borderline
Rocc02G0029420.1 Rosmarinic Acid C4H medium pass
Rocc02G0029500.1 Rosmarinic Acid C4H low borderline
Rocc02G0029950.1 Rosmarinic Acid C4H low borderline
Rocc02G0033720.1 Rosmarinic Acid C4H low borderline
Rocc02G0036420.1 Rosmarinic Acid C4H medium pass
Rocc02G0042700.1 Rosmarinic Acid C4H low borderline
Rocc03G0003960.1 Rosmarinic Acid C4H low borderline
Rocc03G0004010.1 Rosmarinic Acid C4H low borderline
Rocc03G0004050.1 Rosmarinic Acid C4H low borderline
Rocc03G0004060.1 Rosmarinic Acid C4H low borderline
Rocc03G0004090.1 Rosmarinic Acid C4H low borderline
Rocc03G0004510.1 Rosmarinic Acid C4H medium pass
Rocc03G0005140.1 Rosmarinic Acid C4H low borderline