PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Protein/Isoform Record Pathway Family Confidence Status
Rocc01G0007110.1 Steroid DWF4/CYP90B1 low borderline
Rocc01G0012900.1 Steroid DWF4/CYP90B1 low borderline
Rocc01G0013680.1 Steroid DWF4/CYP90B1 medium borderline
Rocc01G0014580.1 Steroid DWF4/CYP90B1 low borderline
Rocc01G0014610.1 Steroid DWF4/CYP90B1 low borderline
Rocc01G0019760.1 Steroid DWF4/CYP90B1 low borderline
Rocc01G0030990.1 Steroid DWF4/CYP90B1 low borderline
Rocc01G0031050.1 Steroid DWF4/CYP90B1 low borderline
Rocc02G0006360.1 Steroid DWF4/CYP90B1 medium borderline
Rocc02G0007040.1 Steroid DWF4/CYP90B1 low borderline
Rocc02G0007100.1 Steroid DWF4/CYP90B1 low borderline
Rocc02G0009270.1 Steroid DWF4/CYP90B1 low borderline
Rocc02G0023700.1 Steroid DWF4/CYP90B1 medium borderline
Rocc02G0023740.1 Steroid DWF4/CYP90B1 medium borderline
Rocc02G0023790.1 Steroid DWF4/CYP90B1 medium borderline
Rocc02G0027030.1 Steroid DWF4/CYP90B1 medium borderline
Rocc03G0004050.1 Steroid DWF4/CYP90B1 medium borderline
Rocc03G0004060.1 Steroid DWF4/CYP90B1 medium borderline
Rocc03G0004080.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0012170.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0012180.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0012190.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0012200.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0024270.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0024840.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0024850.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0034010.1 Steroid DWF4/CYP90B1 low borderline
Rocc03G0034030.1 Steroid DWF4/CYP90B1 medium borderline
Rocc03G0041940.1 Steroid DWF4/CYP90B1 low borderline
Rocc04G0005480.1 Steroid DWF4/CYP90B1 low borderline
Rocc04G0006800.1 Steroid DWF4/CYP90B1 low borderline
Rocc04G0006820.1 Steroid DWF4/CYP90B1 low borderline
Rocc04G0023730.1 Steroid DWF4/CYP90B1 low borderline
Rocc04G0028690.1 Steroid DWF4/CYP90B1 medium borderline
Rocc05G0000090.1 Steroid DWF4/CYP90B1 medium borderline
Rocc05G0002740.1 Steroid DWF4/CYP90B1 medium borderline
Rocc05G0004160.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0005440.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0005600.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0009090.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0009500.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0009850.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0010170.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0010190.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0010400.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0015170.1 Steroid DWF4/CYP90B1 medium borderline
Rocc05G0016540.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0016560.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0017380.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0017400.1 Steroid DWF4/CYP90B1 low borderline