Rubus occidentalis (rubus_occidentalis)
Imported from atlas release summary for Rubus occidentalis.
1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1347
Candidate Genes
C4H
6.78%
C3'H/CYP98A
6.1%
BAHD
4.89%
UGT
4.31%
7DLGT
3.85%
UFGT
3.85%
IFS
3.76%
4CL
3.63%
Other Families
62.84%
More Families (97)
CYP76
130
3.57%
T3O
115
3.16%
POD
104
2.86%
F3H
96
2.64%
F3'H/CYP75B
83
2.28%
DWF4/CYP90B1
82
2.25%
NMT
73
2.0%
CAD
65
1.79%
BR6OX2/CYP85A2
65
1.79%
H6H
63
1.73%
STR
63
1.73%
CODM/T6ODM
58
1.59%
LAC
58
1.59%
CYP71
54
1.48%
CAS
53
1.46%
CYP90D1
50
1.37%
GES
49
1.35%
SMT1/SMT2/SMT3
49
1.35%
TPS
49
1.35%
HCT
44
1.21%
TRI/TRII
37
1.02%
CSE
37
1.02%
GS
34
0.93%
7DLH
33
0.91%
RAS
33
0.91%
PMT
31
0.85%
IO
29
0.8%
G8O/G8H
28
0.77%
SGD
27
0.74%
SLS
26
0.71%
F5H/CYP84A
26
0.71%
T16H
25
0.69%
IFR
25
0.69%
COMT
24
0.66%
F3'5'H/CYP75A
22
0.6%
TAT
22
0.6%
PYKS
20
0.55%
BR6OX1/CYP85A1
20
0.55%
BBE
19
0.52%
CCR
19
0.52%
LAMT
18
0.49%
DFR
18
0.49%
FNS
17
0.47%
ANS/LDOX
16
0.44%
CPD/CYP90A1
15
0.41%
ANR
14
0.38%
NCS
12
0.33%
16OMT
12
0.33%
CYP51G1
12
0.33%
COR
11
0.3%
CYP80B1
10
0.27%
8HGO
10
0.27%
ROT3/CYP90C1
10
0.27%
CNMT
9
0.25%
CCoAOMT
9
0.25%
FPPS
9
0.25%
CYP719
8
0.22%
HPPR
8
0.22%
HMGR
8
0.22%
SQE
7
0.19%
MPO
6
0.16%
PAL
6
0.16%
SMO1/SMO2
6
0.16%
GGPPS
6
0.16%
MVK
6
0.16%
MVD
6
0.16%
ISY
5
0.14%
CHS
5
0.14%
CPR
5
0.14%
SQS/FDFT1
5
0.14%
AACT
5
0.14%
DXS
5
0.14%
CYP80F1
4
0.11%
TYDC_DDC
4
0.11%
DET2
4
0.11%
HMGS
4
0.11%
ODC
3
0.08%
FLS
3
0.08%
DWF7
3
0.08%
6OMT_4OMT_SOMT
2
0.05%
CHI
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 379 | 19 | BAHD (135) | View species results |
| Alkaloid pathway | 309 | 24 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 267 | 11 | POD (87) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (127) | View species results |
| Rosmarinic acid pathway | 118 | 7 | C4H (52) | View species results |
| Steroid pathway | 93 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 255 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rocc01G0000040.1 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Rocc01G0003250.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Rocc01G0005760.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Rocc01G0009760.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Rocc01G0012230.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Rocc01G0014020.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Rocc01G0031440.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Rocc01G0036400.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Rocc02G0001960.1 | Alkaloid | NMT | medium | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| Rocc02G0003490.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Rocc02G0009770.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Rocc02G0011600.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Rocc02G0012010.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Rocc02G0018680.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Rocc02G0028710.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Rocc02G0028720.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Rocc02G0028730.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Rocc02G0045280.1 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Rocc02G0046260.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Rocc03G0025650.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Rocc03G0039710.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Rocc04G0000290.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Rocc04G0004870.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Rocc04G0005720.1 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| Rocc04G0012700.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Rocc04G0012760.1 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Rocc04G0016760.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Rocc04G0023230.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Rocc04G0024580.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Rocc04G0032600.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Rocc04G0032760.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Rocc04G0033170.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Rocc04G0043190.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Rocc05G0001160.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Rocc05G0007160.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Rocc05G0007750.1 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Rocc05G0011620.1 | Alkaloid | NMT | medium | borderline | NMT__00029__sp_Q42963_PMT1_TOBAC |
| Rocc05G0014460.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Rocc05G0017330.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Rocc05G0018540.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Rocc05G0018590.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Rocc05G0018710.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Rocc05G0018790.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Rocc05G0018800.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Rocc05G0023800.1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| Rocc05G0027280.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Rocc05G0036430.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Rocc05G0036440.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Rocc05G0037570.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Rocc05G0045080.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |