PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Gene Pathway Family Confidence Status
Rocc01G0007390.1 Alkaloid T3O medium pass
Rocc01G0010220.1 Alkaloid T3O medium borderline
Rocc01G0010310.1 Alkaloid T3O medium pass
Rocc01G0010920.1 Alkaloid T3O medium pass
Rocc01G0011570.1 Alkaloid T3O low borderline
Rocc01G0014580.1 Alkaloid T3O medium borderline
Rocc01G0014610.1 Alkaloid T3O medium borderline
Rocc01G0015190.1 Alkaloid T3O medium borderline
Rocc01G0017400.1 Alkaloid T3O medium borderline
Rocc01G0017420.1 Alkaloid T3O medium borderline
Rocc01G0019760.1 Alkaloid T3O medium borderline
Rocc01G0021620.1 Alkaloid T3O medium borderline
Rocc01G0027830.1 Alkaloid T3O medium borderline
Rocc01G0028180.1 Alkaloid T3O medium pass
Rocc01G0031090.1 Alkaloid T3O medium borderline
Rocc01G0036240.1 Alkaloid T3O medium borderline
Rocc02G0000870.1 Alkaloid T3O medium borderline
Rocc02G0001950.1 Alkaloid T3O medium pass
Rocc02G0007100.1 Alkaloid T3O medium borderline
Rocc02G0007110.1 Alkaloid T3O medium borderline
Rocc02G0017230.1 Alkaloid T3O low borderline
Rocc02G0020160.1 Alkaloid T3O medium pass
Rocc02G0029420.1 Alkaloid T3O medium borderline
Rocc02G0029950.1 Alkaloid T3O medium borderline
Rocc02G0036420.1 Alkaloid T3O medium borderline
Rocc02G0041000.1 Alkaloid T3O low borderline
Rocc03G0000730.1 Alkaloid T3O low borderline
Rocc03G0008150.1 Alkaloid T3O low borderline
Rocc03G0009920.1 Alkaloid T3O medium borderline
Rocc03G0012170.1 Alkaloid T3O medium borderline
Rocc03G0012190.1 Alkaloid T3O medium borderline
Rocc03G0012200.1 Alkaloid T3O medium borderline
Rocc03G0013330.1 Alkaloid T3O medium borderline
Rocc03G0013960.1 Alkaloid T3O medium borderline
Rocc03G0014730.1 Alkaloid T3O medium borderline
Rocc03G0024850.1 Alkaloid T3O medium borderline
Rocc03G0027290.1 Alkaloid T3O medium pass
Rocc03G0029340.1 Alkaloid T3O medium borderline
Rocc03G0029630.1 Alkaloid T3O medium borderline
Rocc03G0029670.1 Alkaloid T3O medium borderline
Rocc03G0029690.1 Alkaloid T3O medium borderline
Rocc03G0029770.1 Alkaloid T3O medium borderline
Rocc03G0039290.1 Alkaloid T3O medium pass
Rocc03G0039300.1 Alkaloid T3O medium pass
Rocc03G0041280.1 Alkaloid T3O low borderline
Rocc03G0041940.1 Alkaloid T3O low borderline
Rocc04G0000530.1 Alkaloid T3O low borderline
Rocc04G0005480.1 Alkaloid T3O low borderline
Rocc04G0006780.1 Alkaloid T3O low borderline
Rocc04G0007920.1 Alkaloid T3O medium borderline