PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.14% Alkaloid pathway 22.94% Phenylpropanoid pathway 19.82% Flavonoid pathway 13.44% Rosmarinic acid pathway 8.76% Steroid pathway 6.9%
Family Distribution
C4H 6.78% C3'H/CYP98A 6.1% BAHD 4.89% UGT 4.31% 7DLGT 3.85% UFGT 3.85% IFS 3.76% 4CL 3.63%
Other Families 62.84%
More Families (97)
CYP76 130 3.57% T3O 115 3.16% POD 104 2.86% F3H 96 2.64% F3'H/CYP75B 83 2.28% DWF4/CYP90B1 82 2.25% NMT 73 2.0% CAD 65 1.79% BR6OX2/CYP85A2 65 1.79% H6H 63 1.73% STR 63 1.73% CODM/T6ODM 58 1.59% LAC 58 1.59% CYP71 54 1.48% CAS 53 1.46% CYP90D1 50 1.37% GES 49 1.35% SMT1/SMT2/SMT3 49 1.35% TPS 49 1.35% HCT 44 1.21% TRI/TRII 37 1.02% CSE 37 1.02% GS 34 0.93% 7DLH 33 0.91% RAS 33 0.91% PMT 31 0.85% IO 29 0.8% G8O/G8H 28 0.77% SGD 27 0.74% SLS 26 0.71% F5H/CYP84A 26 0.71% T16H 25 0.69% IFR 25 0.69% COMT 24 0.66% F3'5'H/CYP75A 22 0.6% TAT 22 0.6% PYKS 20 0.55% BR6OX1/CYP85A1 20 0.55% BBE 19 0.52% CCR 19 0.52% LAMT 18 0.49% DFR 18 0.49% FNS 17 0.47% ANS/LDOX 16 0.44% CPD/CYP90A1 15 0.41% ANR 14 0.38% NCS 12 0.33% 16OMT 12 0.33% CYP51G1 12 0.33% COR 11 0.3% CYP80B1 10 0.27% 8HGO 10 0.27% ROT3/CYP90C1 10 0.27% CNMT 9 0.25% CCoAOMT 9 0.25% FPPS 9 0.25% CYP719 8 0.22% HPPR 8 0.22% HMGR 8 0.22% SQE 7 0.19% MPO 6 0.16% PAL 6 0.16% SMO1/SMO2 6 0.16% GGPPS 6 0.16% MVK 6 0.16% MVD 6 0.16% ISY 5 0.14% CHS 5 0.14% CPR 5 0.14% SQS/FDFT1 5 0.14% AACT 5 0.14% DXS 5 0.14% CYP80F1 4 0.11% TYDC_DDC 4 0.11% DET2 4 0.11% HMGS 4 0.11% ODC 3 0.08% FLS 3 0.08% DWF7 3 0.08% 6OMT_4OMT_SOMT 2 0.05% CHI 2 0.05% CMK/IspE 2 0.05% HDS/IspG 2 0.05% MCT/IspD 2 0.05% PMK 2 0.05% TDC 1 0.03% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% DWF1 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% FK 1 0.03% HDR/IspH 1 0.03% DXR 1 0.03% MDS/IspF 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
Rocc07G0035580.1 Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Rocc07G0035590.1 Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Rocc07G0035600.1 Terpenoid UGT medium pass UGT__00085__sp_Q9FIA0_U76C2_ARATH
Rocc07G0035620.1 Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Rocc07G0035630.1 Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Rocc07G0041370.1 Terpenoid UGT medium pass UGT__00088__sp_Q9LK73_U88A1_ARATH
Rocc07G0045120.1 Terpenoid UGT medium pass UGT__00086__sp_Q9LFJ8_U78D2_ARATH