Rubus occidentalis (rubus_occidentalis)
Imported from atlas release summary for Rubus occidentalis.
1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3641
Family-Level Calls
C4H
6.78%
C3'H/CYP98A
6.1%
BAHD
4.89%
UGT
4.31%
7DLGT
3.85%
UFGT
3.85%
IFS
3.76%
4CL
3.63%
Other Families
62.84%
More Families (97)
CYP76
130
3.57%
T3O
115
3.16%
POD
104
2.86%
F3H
96
2.64%
F3'H/CYP75B
83
2.28%
DWF4/CYP90B1
82
2.25%
NMT
73
2.0%
CAD
65
1.79%
BR6OX2/CYP85A2
65
1.79%
H6H
63
1.73%
STR
63
1.73%
CODM/T6ODM
58
1.59%
LAC
58
1.59%
CYP71
54
1.48%
CAS
53
1.46%
CYP90D1
50
1.37%
GES
49
1.35%
SMT1/SMT2/SMT3
49
1.35%
TPS
49
1.35%
HCT
44
1.21%
TRI/TRII
37
1.02%
CSE
37
1.02%
GS
34
0.93%
7DLH
33
0.91%
RAS
33
0.91%
PMT
31
0.85%
IO
29
0.8%
G8O/G8H
28
0.77%
SGD
27
0.74%
SLS
26
0.71%
F5H/CYP84A
26
0.71%
T16H
25
0.69%
IFR
25
0.69%
COMT
24
0.66%
F3'5'H/CYP75A
22
0.6%
TAT
22
0.6%
PYKS
20
0.55%
BR6OX1/CYP85A1
20
0.55%
BBE
19
0.52%
CCR
19
0.52%
LAMT
18
0.49%
DFR
18
0.49%
FNS
17
0.47%
ANS/LDOX
16
0.44%
CPD/CYP90A1
15
0.41%
ANR
14
0.38%
NCS
12
0.33%
16OMT
12
0.33%
CYP51G1
12
0.33%
COR
11
0.3%
CYP80B1
10
0.27%
8HGO
10
0.27%
ROT3/CYP90C1
10
0.27%
CNMT
9
0.25%
CCoAOMT
9
0.25%
FPPS
9
0.25%
CYP719
8
0.22%
HPPR
8
0.22%
HMGR
8
0.22%
SQE
7
0.19%
MPO
6
0.16%
PAL
6
0.16%
SMO1/SMO2
6
0.16%
GGPPS
6
0.16%
MVK
6
0.16%
MVD
6
0.16%
ISY
5
0.14%
CHS
5
0.14%
CPR
5
0.14%
SQS/FDFT1
5
0.14%
AACT
5
0.14%
DXS
5
0.14%
CYP80F1
4
0.11%
TYDC_DDC
4
0.11%
DET2
4
0.11%
HMGS
4
0.11%
ODC
3
0.08%
FLS
3
0.08%
DWF7
3
0.08%
6OMT_4OMT_SOMT
2
0.05%
CHI
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 379 | 19 | BAHD (135) | View species results |
| Alkaloid pathway | 309 | 24 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 267 | 11 | POD (87) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (127) | View species results |
| Rosmarinic acid pathway | 118 | 7 | C4H (52) | View species results |
| Steroid pathway | 93 | 12 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 255 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rocc05G0021160.1 | Alkaloid | PMT | low | borderline |
| Rocc05G0024120.1 | Alkaloid | PMT | low | borderline |
| Rocc05G0024130.1 | Alkaloid | PMT | low | borderline |
| Rocc05G0024150.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0024160.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0024170.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0024190.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0024200.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0024220.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0024250.1 | Alkaloid | PMT | medium | pass |
| Rocc05G0032810.1 | Alkaloid | PMT | medium | pass |
| Rocc06G0004040.1 | Alkaloid | PMT | low | borderline |
| Rocc06G0008530.1 | Alkaloid | PMT | low | borderline |
| Rocc06G0010090.1 | Alkaloid | PMT | low | borderline |
| Rocc06G0010130.1 | Alkaloid | PMT | low | borderline |
| Rocc06G0017980.1 | Alkaloid | PMT | low | borderline |
| Rocc07G0036710.1 | Alkaloid | PMT | low | borderline |
| Rocc07G0043660.1 | Alkaloid | PMT | medium | borderline |
| Rocc01G0003400.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0001650.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0004260.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0010440.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0011890.1 | Alkaloid | PYKS | high | pass |
| Rocc02G0029410.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0037350.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0037380.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0038770.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0046350.1 | Alkaloid | PYKS | high | pass |
| Rocc03G0010070.1 | Alkaloid | PYKS | low | borderline |
| Rocc04G0008270.1 | Alkaloid | PYKS | low | borderline |
| Rocc04G0028770.1 | Alkaloid | PYKS | high | pass |
| Rocc04G0028780.1 | Alkaloid | PYKS | high | pass |
| Rocc04G0030200.1 | Alkaloid | PYKS | low | borderline |
| Rocc05G0016880.1 | Alkaloid | PYKS | low | borderline |
| Rocc07G0010880.1 | Alkaloid | PYKS | high | pass |
| Rocc07G0033410.1 | Alkaloid | PYKS | low | borderline |
| Rocc07G0033420.1 | Alkaloid | PYKS | low | borderline |
| Rocc07G0033470.1 | Alkaloid | PYKS | low | borderline |
| Rocc02G0048120.1 | Alkaloid | SGD | medium | pass |
| Rocc03G0001770.1 | Alkaloid | SGD | low | borderline |
| Rocc03G0001780.1 | Alkaloid | SGD | low | borderline |
| Rocc03G0001790.1 | Alkaloid | SGD | medium | pass |
| Rocc03G0014270.1 | Alkaloid | SGD | low | borderline |
| Rocc03G0025810.1 | Alkaloid | SGD | medium | pass |
| Rocc03G0025840.1 | Alkaloid | SGD | medium | pass |
| Rocc03G0025880.1 | Alkaloid | SGD | medium | pass |
| Rocc03G0028650.1 | Alkaloid | SGD | medium | pass |
| Rocc03G0047480.1 | Alkaloid | SGD | medium | pass |
| Rocc04G0006170.1 | Alkaloid | SGD | medium | pass |
| Rocc04G0014530.1 | Alkaloid | SGD | low | borderline |