PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Rocc02G0043890.1 Alkaloid 7DLGT low borderline
Rocc02G0043910.1 Alkaloid 7DLGT low borderline
Rocc02G0045500.1 Alkaloid 7DLGT low borderline
Rocc03G0004270.1 Alkaloid 7DLGT low borderline
Rocc03G0005390.1 Alkaloid 7DLGT low borderline
Rocc03G0005410.1 Alkaloid 7DLGT low borderline
Rocc03G0005420.1 Alkaloid 7DLGT low borderline
Rocc03G0005430.1 Alkaloid 7DLGT low borderline
Rocc03G0005500.1 Alkaloid 7DLGT low borderline
Rocc03G0005510.1 Alkaloid 7DLGT low borderline
Rocc03G0005550.1 Alkaloid 7DLGT low borderline
Rocc03G0005560.1 Alkaloid 7DLGT medium pass
Rocc03G0007400.1 Alkaloid 7DLGT high pass
Rocc03G0007440.1 Alkaloid 7DLGT medium pass
Rocc03G0007450.1 Alkaloid 7DLGT high pass
Rocc03G0013090.1 Alkaloid 7DLGT medium pass
Rocc03G0016880.1 Alkaloid 7DLGT high pass
Rocc03G0016910.1 Alkaloid 7DLGT high pass
Rocc03G0022420.1 Alkaloid 7DLGT low borderline
Rocc03G0031940.1 Alkaloid 7DLGT low borderline
Rocc03G0033720.1 Alkaloid 7DLGT medium pass
Rocc03G0033730.1 Alkaloid 7DLGT medium pass
Rocc03G0033750.1 Alkaloid 7DLGT high pass
Rocc03G0033770.1 Alkaloid 7DLGT medium pass
Rocc03G0033790.1 Alkaloid 7DLGT high pass
Rocc03G0037810.1 Alkaloid 7DLGT medium pass
Rocc03G0044320.1 Alkaloid 7DLGT low borderline
Rocc04G0001570.1 Alkaloid 7DLGT medium pass
Rocc04G0006020.1 Alkaloid 7DLGT low borderline
Rocc04G0007030.1 Alkaloid 7DLGT low borderline
Rocc04G0007040.1 Alkaloid 7DLGT low borderline
Rocc04G0023760.1 Alkaloid 7DLGT low borderline
Rocc04G0025150.1 Alkaloid 7DLGT low borderline
Rocc04G0025160.1 Alkaloid 7DLGT low borderline
Rocc04G0025390.1 Alkaloid 7DLGT low borderline
Rocc04G0031710.1 Alkaloid 7DLGT low borderline
Rocc04G0031720.1 Alkaloid 7DLGT low borderline
Rocc04G0035940.1 Alkaloid 7DLGT medium pass
Rocc04G0041730.1 Alkaloid 7DLGT low borderline
Rocc05G0002050.1 Alkaloid 7DLGT medium pass
Rocc05G0004090.1 Alkaloid 7DLGT medium pass
Rocc05G0004750.1 Alkaloid 7DLGT low borderline
Rocc05G0012450.1 Alkaloid 7DLGT high pass
Rocc05G0012640.1 Alkaloid 7DLGT low borderline
Rocc05G0021750.1 Alkaloid 7DLGT low borderline
Rocc05G0023220.1 Alkaloid 7DLGT low borderline
Rocc05G0025690.1 Alkaloid 7DLGT medium pass
Rocc05G0037410.1 Alkaloid 7DLGT medium pass
Rocc05G0037430.1 Alkaloid 7DLGT low borderline
Rocc05G0043290.1 Alkaloid 7DLGT medium pass