PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Rocc03G0046960.1 Flavonoid ANR medium borderline
Rocc05G0012520.1 Flavonoid ANR medium borderline
Rocc05G0021200.1 Flavonoid ANR low borderline
Rocc05G0027830.1 Flavonoid ANR medium borderline
Rocc05G0027840.1 Flavonoid ANR medium borderline
Rocc06G0001840.1 Flavonoid ANR low borderline
Rocc06G0010460.1 Flavonoid ANR medium borderline
Rocc06G0028390.1 Flavonoid ANR low borderline
Rocc01G0001970.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0010200.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0017510.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0017690.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0017730.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0041490.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0045480.1 Flavonoid ANS/LDOX medium borderline
Rocc03G0041700.1 Flavonoid ANS/LDOX medium borderline
Rocc04G0031300.1 Flavonoid ANS/LDOX low borderline
Rocc04G0031370.1 Flavonoid ANS/LDOX medium borderline
Rocc04G0042850.1 Flavonoid ANS/LDOX low borderline
Rocc06G0023120.1 Flavonoid ANS/LDOX medium borderline
Rocc06G0042860.1 Flavonoid ANS/LDOX medium borderline
Rocc06G0042910.1 Flavonoid ANS/LDOX medium borderline
Rocc06G0049120.1 Flavonoid ANS/LDOX medium borderline
Rocc07G0027630.1 Flavonoid ANS/LDOX medium borderline
Rocc02G0026380.1 Flavonoid C4H low borderline
Rocc02G0029500.1 Flavonoid C4H low borderline
Rocc03G0004510.1 Flavonoid C4H medium borderline
Rocc04G0006800.1 Flavonoid C4H medium borderline
Rocc04G0006810.1 Flavonoid C4H medium borderline
Rocc04G0027530.1 Flavonoid C4H medium borderline
Rocc04G0027560.1 Flavonoid C4H medium borderline
Rocc04G0027570.1 Flavonoid C4H medium borderline
Rocc04G0042870.1 Flavonoid C4H medium borderline
Rocc05G0003160.1 Flavonoid C4H low borderline
Rocc05G0010350.1 Flavonoid C4H medium borderline
Rocc07G0018970.1 Flavonoid C4H medium borderline
Rocc07G0037680.1 Flavonoid C4H low borderline
Rocc07G0033360.1 Flavonoid CHI medium pass
Rocc07G0037660.1 Flavonoid CHI medium pass
Rocc02G0011890.1 Flavonoid CHS medium pass
Rocc02G0046350.1 Flavonoid CHS medium pass
Rocc04G0028770.1 Flavonoid CHS medium pass
Rocc04G0028780.1 Flavonoid CHS medium pass
Rocc07G0010880.1 Flavonoid CHS medium pass
Rocc02G0001860.1 Flavonoid DFR medium borderline
Rocc02G0022570.1 Flavonoid DFR medium borderline
Rocc02G0023750.1 Flavonoid DFR medium pass
Rocc03G0015960.1 Flavonoid DFR low borderline
Rocc03G0028520.1 Flavonoid DFR medium borderline
Rocc04G0008260.1 Flavonoid DFR medium pass