PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rocc06G0017220.1 Phenylpropanoid CSE medium pass
Rocc06G0017260.1 Phenylpropanoid CSE medium pass
Rocc06G0038680.1 Phenylpropanoid CSE low borderline
Rocc07G0005740.1 Phenylpropanoid CSE medium pass
Rocc07G0006030.1 Phenylpropanoid CSE medium pass
Rocc07G0012590.1 Phenylpropanoid CSE medium pass
Rocc01G0007390.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc01G0010920.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc02G0000870.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc02G0001950.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc02G0021200.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc02G0023970.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc03G0005120.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc03G0005140.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc03G0024610.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc03G0024660.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc03G0033830.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc04G0010140.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc04G0010150.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc04G0011220.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc04G0012820.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0004470.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0009810.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0010200.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0010350.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0014090.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0014110.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0016500.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc05G0016510.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc06G0007150.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc07G0006000.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc07G0020260.1 Phenylpropanoid F5H/CYP84A medium borderline
Rocc01G0003680.1 Phenylpropanoid HCT medium pass
Rocc01G0022540.1 Phenylpropanoid HCT low borderline
Rocc01G0022560.1 Phenylpropanoid HCT low borderline
Rocc01G0022580.1 Phenylpropanoid HCT low borderline
Rocc01G0028240.1 Phenylpropanoid HCT low borderline
Rocc02G0002030.1 Phenylpropanoid HCT low borderline
Rocc02G0003930.1 Phenylpropanoid HCT low borderline
Rocc02G0020870.1 Phenylpropanoid HCT low borderline
Rocc02G0030370.1 Phenylpropanoid HCT medium pass
Rocc03G0000100.1 Phenylpropanoid HCT medium pass
Rocc03G0000150.1 Phenylpropanoid HCT medium pass
Rocc03G0007640.1 Phenylpropanoid HCT medium pass
Rocc03G0007660.1 Phenylpropanoid HCT medium pass
Rocc03G0007670.1 Phenylpropanoid HCT medium pass
Rocc03G0018170.1 Phenylpropanoid HCT medium pass
Rocc04G0010710.1 Phenylpropanoid HCT low borderline
Rocc04G0010720.1 Phenylpropanoid HCT low borderline
Rocc04G0010740.1 Phenylpropanoid HCT low borderline