PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Rocc03G0013960.1 Terpenoid CYP71 medium borderline
Rocc03G0013980.1 Terpenoid CYP71 medium borderline
Rocc03G0014030.1 Terpenoid CYP71 low borderline
Rocc03G0015150.1 Terpenoid CYP71 medium pass
Rocc03G0024520.1 Terpenoid CYP71 medium pass
Rocc03G0024610.1 Terpenoid CYP71 low borderline
Rocc03G0024660.1 Terpenoid CYP71 medium borderline
Rocc03G0024830.1 Terpenoid CYP71 medium borderline
Rocc03G0029630.1 Terpenoid CYP71 medium borderline
Rocc03G0029670.1 Terpenoid CYP71 medium borderline
Rocc03G0029690.1 Terpenoid CYP71 medium borderline
Rocc03G0041210.1 Terpenoid CYP71 low borderline
Rocc04G0010140.1 Terpenoid CYP71 medium borderline
Rocc04G0010150.1 Terpenoid CYP71 low borderline
Rocc04G0011470.1 Terpenoid CYP71 low borderline
Rocc04G0012060.1 Terpenoid CYP71 medium pass
Rocc04G0015200.1 Terpenoid CYP71 low borderline
Rocc04G0020680.1 Terpenoid CYP71 medium borderline
Rocc05G0010160.1 Terpenoid CYP71 medium borderline
Rocc05G0010170.1 Terpenoid CYP71 medium borderline
Rocc05G0010190.1 Terpenoid CYP71 medium borderline
Rocc05G0010200.1 Terpenoid CYP71 low borderline
Rocc05G0010260.1 Terpenoid CYP71 medium borderline
Rocc05G0010350.1 Terpenoid CYP71 low borderline
Rocc05G0010360.1 Terpenoid CYP71 low borderline
Rocc05G0010380.1 Terpenoid CYP71 medium borderline
Rocc05G0010400.1 Terpenoid CYP71 medium borderline
Rocc06G0003790.1 Terpenoid CYP71 medium borderline
Rocc06G0031410.1 Terpenoid CYP71 medium borderline
Rocc06G0033080.1 Terpenoid CYP71 medium pass
Rocc06G0049350.1 Terpenoid CYP71 medium pass
Rocc06G0058470.1 Terpenoid CYP71 medium borderline
Rocc07G0006930.1 Terpenoid CYP71 low borderline
Rocc07G0011190.1 Terpenoid CYP71 medium borderline
Rocc07G0016710.1 Terpenoid CYP71 medium borderline
Rocc07G0016730.1 Terpenoid CYP71 medium borderline
Rocc07G0020260.1 Terpenoid CYP71 medium borderline
Rocc07G0036350.1 Terpenoid CYP71 medium pass
Rocc07G0036360.1 Terpenoid CYP71 medium pass
Rocc01G0007390.1 Terpenoid CYP76 low borderline
Rocc01G0010220.1 Terpenoid CYP76 medium borderline
Rocc01G0014580.1 Terpenoid CYP76 medium borderline
Rocc01G0014610.1 Terpenoid CYP76 medium pass
Rocc01G0015190.1 Terpenoid CYP76 medium pass
Rocc01G0017400.1 Terpenoid CYP76 medium borderline
Rocc01G0017420.1 Terpenoid CYP76 medium borderline
Rocc01G0019760.1 Terpenoid CYP76 medium borderline
Rocc01G0021620.1 Terpenoid CYP76 medium pass
Rocc01G0021790.1 Terpenoid CYP76 low borderline
Rocc01G0027830.1 Terpenoid CYP76 medium borderline