PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1672
Candidate Protein Records
1347
Pathway-Level Records
3641
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rocc05G0024670.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0038210.1 Steroid DWF4/CYP90B1 medium borderline
Rocc05G0039200.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0039230.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0039820.1 Steroid DWF4/CYP90B1 low borderline
Rocc05G0039830.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0002710.1 Steroid DWF4/CYP90B1 medium borderline
Rocc06G0003790.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0011370.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0022070.1 Steroid DWF4/CYP90B1 medium borderline
Rocc06G0023440.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0024060.1 Steroid DWF4/CYP90B1 medium borderline
Rocc06G0028040.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0029210.1 Steroid DWF4/CYP90B1 medium borderline
Rocc06G0031830.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0039240.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0002020.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0004250.1 Steroid DWF4/CYP90B1 medium borderline
Rocc07G0005980.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0006000.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0006800.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0011150.1 Steroid DWF4/CYP90B1 medium borderline
Rocc07G0011190.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0018970.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0020260.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0024140.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0042110.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0042190.1 Steroid DWF4/CYP90B1 low borderline
Rocc07G0043390.1 Steroid DWF4/CYP90B1 low borderline
Rocc06G0020990.1 Steroid DWF5 medium pass
Rocc02G0013270.1 Steroid DWF7 medium pass
Rocc03G0046490.1 Steroid DWF7 low borderline
Rocc06G0036300.1 Steroid DWF7 medium pass
Rocc06G0047670.1 Steroid FK high pass
Rocc04G0013030.1 Steroid HYD1 high pass
Rocc01G0010310.1 Steroid ROT3/CYP90C1 medium borderline
Rocc01G0011570.1 Steroid ROT3/CYP90C1 medium borderline
Rocc02G0001950.1 Steroid ROT3/CYP90C1 medium borderline
Rocc03G0029670.1 Steroid ROT3/CYP90C1 medium borderline
Rocc04G0011220.1 Steroid ROT3/CYP90C1 medium borderline
Rocc04G0026970.1 Steroid ROT3/CYP90C1 low borderline
Rocc05G0020390.1 Steroid ROT3/CYP90C1 medium borderline
Rocc06G0007150.1 Steroid ROT3/CYP90C1 low borderline
Rocc06G0031600.1 Steroid ROT3/CYP90C1 medium borderline
Rocc07G0013300.1 Steroid ROT3/CYP90C1 medium borderline
Rocc03G0007750.1 Steroid SMO1/SMO2 medium pass
Rocc05G0016290.1 Steroid SMO1/SMO2 medium pass
Rocc05G0028010.1 Steroid SMO1/SMO2 low borderline
Rocc05G0028130.1 Steroid SMO1/SMO2 medium pass
Rocc06G0058260.1 Steroid SMO1/SMO2 medium pass