PlantSME Plant secondary metabolism enzyme database

Rubus occidentalis (rubus_occidentalis)

Imported from atlas release summary for Rubus occidentalis.

1347
Family-Level Assignments
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 379 19 BAHD (135) View species results
Alkaloid pathway 309 24 7DLGT (63) View species results
Phenylpropanoid pathway 267 11 POD (87) View species results
Flavonoid pathway 181 11 UFGT (127) View species results
Rosmarinic acid pathway 118 7 C4H (52) View species results
Steroid pathway 93 12 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 255 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Rocc05G0026620.1 Terpenoid HMGR medium pass
Rocc05G0015430.1 Terpenoid HMGS medium pass
Rocc05G0040010.1 Terpenoid HMGS medium pass
Rocc07G0014820.1 Terpenoid HMGS high pass
Rocc07G0015370.1 Terpenoid HMGS low borderline
Rocc06G0031460.1 Terpenoid IDI medium pass
Rocc03G0038090.1 Terpenoid MCT/IspD low borderline
Rocc05G0028370.1 Terpenoid MCT/IspD high pass
Rocc05G0013620.1 Terpenoid MDS/IspF high pass
Rocc04G0019490.1 Terpenoid MVD low borderline
Rocc04G0019850.1 Terpenoid MVD low borderline
Rocc06G0009500.1 Terpenoid MVD low borderline
Rocc07G0019780.1 Terpenoid MVD low borderline
Rocc07G0019910.1 Terpenoid MVD medium pass
Rocc07G0019990.1 Terpenoid MVD low borderline
Rocc01G0029540.1 Terpenoid MVK low borderline
Rocc02G0006980.1 Terpenoid MVK low borderline
Rocc02G0023030.1 Terpenoid MVK low borderline
Rocc04G0003490.1 Terpenoid MVK low borderline
Rocc06G0035820.1 Terpenoid MVK medium pass
Rocc07G0001740.1 Terpenoid MVK low borderline
Rocc05G0022250.1 Terpenoid PMK medium pass
Rocc06G0005820.1 Terpenoid PMK low borderline
Rocc01G0016710.1 Terpenoid TPS medium pass
Rocc01G0027590.1 Terpenoid TPS medium pass
Rocc01G0027840.1 Terpenoid TPS medium pass
Rocc01G0027860.1 Terpenoid TPS medium pass
Rocc02G0016050.1 Terpenoid TPS medium pass
Rocc02G0029240.1 Terpenoid TPS medium pass
Rocc02G0029290.1 Terpenoid TPS medium pass
Rocc02G0029300.1 Terpenoid TPS medium pass
Rocc02G0038000.1 Terpenoid TPS medium pass
Rocc02G0038050.1 Terpenoid TPS medium pass
Rocc02G0038090.1 Terpenoid TPS medium pass
Rocc02G0038120.1 Terpenoid TPS medium pass
Rocc03G0012300.1 Terpenoid TPS medium pass
Rocc03G0012310.1 Terpenoid TPS medium pass
Rocc03G0012320.1 Terpenoid TPS medium pass
Rocc03G0012330.1 Terpenoid TPS medium pass
Rocc03G0012340.1 Terpenoid TPS medium pass
Rocc03G0012350.1 Terpenoid TPS medium pass
Rocc03G0012380.1 Terpenoid TPS low borderline
Rocc03G0013930.1 Terpenoid TPS medium pass
Rocc03G0027730.1 Terpenoid TPS medium pass
Rocc03G0027740.1 Terpenoid TPS medium pass
Rocc03G0027750.1 Terpenoid TPS medium pass
Rocc03G0027760.1 Terpenoid TPS medium pass
Rocc03G0028600.1 Terpenoid TPS low borderline
Rocc03G0028610.1 Terpenoid TPS medium pass
Rocc03G0028720.1 Terpenoid TPS medium pass