Salvia miltiorrhiza (salvia_miltiorrhiza)
Imported from atlas release summary for Salvia miltiorrhiza.
1924
Candidate Protein Records
1674
Pathway-Level Records
4437
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4437
Family-Level Calls
C3'H/CYP98A
7.51%
C4H
6.96%
BAHD
5.45%
T3O
4.69%
UGT
4.35%
UFGT
4.33%
7DLGT
4.28%
IFS
4.17%
Other Families
58.26%
More Families (96)
CYP76
175
3.94%
4CL
130
2.93%
F3'H/CYP75B
126
2.84%
DWF4/CYP90B1
126
2.84%
POD
125
2.82%
F3H
102
2.3%
BR6OX2/CYP85A2
95
2.14%
CYP71
82
1.85%
NMT
66
1.49%
CODM/T6ODM
65
1.46%
STR
64
1.44%
CAD
61
1.37%
GES
57
1.28%
LAC
57
1.28%
TPS
57
1.28%
CAS
50
1.13%
BBE
46
1.04%
HCT
45
1.01%
CYP90D1
45
1.01%
7DLH
43
0.97%
IFR
41
0.92%
SMT1/SMT2/SMT3
41
0.92%
TRI/TRII
38
0.86%
RAS
38
0.86%
GS
37
0.83%
PYKS
36
0.81%
H6H
36
0.81%
TAT
33
0.74%
PMT
32
0.72%
ANR
29
0.65%
CSE
29
0.65%
CYP51G1
28
0.63%
T16H
27
0.61%
SLS
26
0.59%
NCS
25
0.56%
LAMT
23
0.52%
CCR
22
0.5%
FNS
21
0.47%
COMT
21
0.47%
CPD/CYP90A1
19
0.43%
BR6OX1/CYP85A1
18
0.41%
G8O/G8H
17
0.38%
16OMT
17
0.38%
IO
16
0.36%
F3'5'H/CYP75A
16
0.36%
FPPS
14
0.32%
CYP80B1
12
0.27%
CNMT
12
0.27%
SGD
12
0.27%
PAL
12
0.27%
F5H/CYP84A
12
0.27%
8HGO
11
0.25%
CCoAOMT
10
0.23%
ROT3/CYP90C1
10
0.23%
GGPPS
10
0.23%
MPO
9
0.2%
CYP719
9
0.2%
DFR
9
0.2%
ANS/LDOX
9
0.2%
CHS
9
0.2%
COR
8
0.18%
AACT
8
0.18%
HPPR
7
0.16%
HMGR
7
0.16%
DXS
6
0.14%
CPR
5
0.11%
SQS/FDFT1
5
0.11%
MCT/IspD
5
0.11%
MVD
5
0.11%
MVK
5
0.11%
TYDC_DDC
4
0.09%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
SQE
4
0.09%
DET2
4
0.09%
ADC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
ISY
3
0.07%
CYP80F1
3
0.07%
DWF1
3
0.07%
HDR/IspH
3
0.07%
IDI
3
0.07%
XMT_MXMT_DXMT
2
0.05%
TDC
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
ODC
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 542 | 19 | BAHD (187) | View species results |
| Alkaloid pathway | 330 | 20 | 7DLGT (84) | View species results |
| Phenylpropanoid pathway | 299 | 11 | POD (118) | View species results |
| Flavonoid pathway | 245 | 11 | UFGT (179) | View species results |
| Rosmarinic acid pathway | 177 | 7 | C4H (91) | View species results |
| Steroid pathway | 81 | 11 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1940 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 325 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Smil03G0016060.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil03G0018340.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil03G0024210.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil03G0025840.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil03G0037290.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0004030.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0007660.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0013750.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0016870.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0018460.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0021900.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0023940.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0030310.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0030340.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0030350.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil04G0030360.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0030370.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0030380.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0030390.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil04G0030400.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil05G0001060.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil05G0001070.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil05G0001080.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil05G0001090.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil05G0003650.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil05G0004270.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil05G0020040.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil05G0022250.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil06G0001130.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil06G0006180.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil06G0010040.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil06G0028350.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil06G0031570.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil07G0002890.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Smil07G0005370.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil07G0005390.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil07G0005400.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil07G0020090.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| SmilGWHAOSJ000004020004700.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| SmilGWHAOSJ000005460007130.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Smil00G0023440.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Smil00G0023450.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Smil04G0012290.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Smil04G0016120.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Smil06G0005320.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Smil06G0005330.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Smil06G0005340.1 | Alkaloid | COR | medium | pass | COR__00003__sp_Q9SQ68_COR13_PAPSO |
| Smil06G0012080.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Smil00G0020820.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00011__sp_Q948Y1_C719A_COPJA |
| Smil02G0023880.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |