PlantSME Plant secondary metabolism enzyme database

Sparganium stoloniferum (sparganium_stoloniferum)

Imported from atlas release summary for Sparganium stoloniferum.

980
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.65% Phenylpropanoid pathway 25.61% Alkaloid pathway 20.2% Flavonoid pathway 11.53% Rosmarinic acid pathway 9.18% Steroid pathway 5.82%
Family Distribution
BAHD 7.18% C3'H/CYP98A 6.05% POD 5.97% C4H 5.84% 4CL 4.38% T3O 3.8% IFS 3.46% CYP76 3.38%
Other Families 59.95%
More Families (96)
UGT 73 3.05% UFGT 68 2.84% 7DLGT 66 2.75% DWF4/CYP90B1 58 2.42% F3H 54 2.25% NMT 53 2.21% F3'H/CYP75B 46 1.92% HCT 42 1.75% BR6OX2/CYP85A2 41 1.71% STR 37 1.54% RAS 37 1.54% PMT 36 1.5% SMT1/SMT2/SMT3 36 1.5% CYP71 35 1.46% CAD 34 1.42% LAC 31 1.29% PYKS 29 1.21% CODM/T6ODM 28 1.17% CSE 28 1.17% H6H 25 1.04% IFR 25 1.04% T16H 24 1.0% CYP90D1 23 0.96% GS 21 0.88% FNS 20 0.83% TRI/TRII 19 0.79% CAS 19 0.79% ANR 17 0.71% CCR 16 0.67% G8O/G8H 15 0.63% PAL 15 0.63% COR 14 0.58% NCS 14 0.58% SGD 14 0.58% LAMT 12 0.5% GES 12 0.5% F3'5'H/CYP75A 12 0.5% TPS 12 0.5% SLS 11 0.46% 8HGO 11 0.46% CPD/CYP90A1 10 0.42% BR6OX1/CYP85A1 10 0.42% IO 9 0.38% DFR 9 0.38% COMT 9 0.38% CYP51G1 9 0.38% TAT 8 0.33% ROT3/CYP90C1 8 0.33% MVK 8 0.33% BBE 7 0.29% CNMT 7 0.29% CCoAOMT 7 0.29% 16OMT 6 0.25% TDC 6 0.25% MPO 6 0.25% TYDC_DDC 6 0.25% 7DLH 6 0.25% ANS/LDOX 6 0.25% CHI 6 0.25% DET2 6 0.25% AACT 6 0.25% CHS 5 0.21% CPR 5 0.21% HPPR 5 0.21% SMO1/SMO2 5 0.21% SQS/FDFT1 5 0.21% GGPPS 5 0.21% CYP719 4 0.17% CYP80B1 4 0.17% F5H/CYP84A 4 0.17% FPPS 4 0.17% XMT_MXMT_DXMT 3 0.13% ADC 3 0.13% DWF7 3 0.13% HYD1 3 0.13% HMGR 3 0.13% PMK 3 0.13% IDI 3 0.13% MVD 3 0.13% HMGS 3 0.13% DXS 3 0.13% 6OMT_4OMT_SOMT 2 0.08% ISY 2 0.08% FLS 2 0.08% DWF1 2 0.08% DWF5 2 0.08% HDS/IspG 2 0.08% CMK/IspE 2 0.08% MCT/IspD 2 0.08% CYP80F1 1 0.04% FK 1 0.04% CPI1 1 0.04% SQE 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 271 19 BAHD (133) View species results
Phenylpropanoid pathway 251 11 POD (130) View species results
Alkaloid pathway 198 20 NMT (29) View species results
Flavonoid pathway 113 9 UFGT (62) View species results
Rosmarinic acid pathway 90 7 C4H (32) View species results
Steroid pathway 57 12 SMT1/SMT2/SMT3 (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 870 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 251 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
sparganium_stoloniferum_evm.model.Chr10.871 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
sparganium_stoloniferum_evm.model.Chr13.538 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
sparganium_stoloniferum_evm.model.Chr3.1156 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
sparganium_stoloniferum_evm.model.Chr3.2009 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
sparganium_stoloniferum_evm.model.Chr3.990 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
sparganium_stoloniferum_evm.model.Chr3.993 Terpenoid TPS medium pass TPS__00077__sp_D2YZP9_BISS_ZINOF
sparganium_stoloniferum_evm.model.Chr3.998 Terpenoid TPS medium pass TPS__00077__sp_D2YZP9_BISS_ZINOF
sparganium_stoloniferum_evm.model.Chr3.999 Terpenoid TPS medium pass TPS__00077__sp_D2YZP9_BISS_ZINOF
sparganium_stoloniferum_evm.model.Chr5.238 Terpenoid TPS medium pass TPS__00141__sp_M4HXU6_TPSD1_PINBN
sparganium_stoloniferum_evm.model.Chr8.1777 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
sparganium_stoloniferum_evm.model.Chr8.1778 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
sparganium_stoloniferum_evm.model.Chr8.1781 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC